Construct: ORF ccsbBroadEn_13065
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009401.1_s300c1, BRDN0000390076
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC16A10 (117247)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 117247 | SLC16A10 | solute carrier family 16 me... | XM_017010237.1 | 72.8% | 72.3% | 1_222del;544T>C;802A>G |
| 2 | human | 117247 | SLC16A10 | solute carrier family 16 me... | NM_018593.5 | 38.8% | 38.6% | 1_942del;1264T>C;1522A>G |
| 3 | human | 117247 | SLC16A10 | solute carrier family 16 me... | XR_001743158.1 | 8.9% | (many diffs) | |
| 4 | mouse | 72472 | Slc16a10 | solute carrier family 16 (m... | XR_380076.3 | 23% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 67
- ORF end:
- 670
- ORF length:
- 603
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCAATGA AACATGTAAA TGAAAGATTT CAAGATGAAA AAAATAAAGA GGTTGTTCTC 121 ATGTGCATTG GCGTCACTTC AGGAGTTGGA CGACTGCTCT TTGGCCGGAT TGCAGATTAT 181 GTGCCTGGTG TGAAGAAGGT TTATCTACAG GTACTCTCCT TTTTCTTCAT TGGTCTGATG 241 TCCATGATGA TTCCTCTGTG TAGCATCTTT GGGGCCCTCA TTGCTGTGTG CCTCATCATG 301 GGTCTCTTCG ATGGATGCTT CATTTCCATT ATGGCTCCCA TAGCCTTTGA GTTAGTTGGT 361 GCCCAGGATG TCTCCCAAGC AATTGGACTT CTGCTCGGAT TCATGTCTAT ACCCATGACT 421 GTTGGCCCAC CCATTGCAGG GTTACTTCGT GACAAACTGG GCTCCTATGA TGTGGCATTC 481 TACCTCGCTG GAGTCCCTCC CCTTATTGGA GGTGCTGTGC TTTGTTTTAT CCCGTGGATC 541 CATAGTAAGA AGCAAAGAGA GATCAGTAAA ACCACTGGAA AAGAAAAGAT GGAGAAAATG 601 TTGGAAAACC AGAACTCTCT GCTGTCAAGT TCATCTGGAA TGTTCGAGAA AGAATCTGAC 661 TCTATTATTT ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca 721 atttgttgca acgaac