Construct: ORF ccsbBroadEn_13145

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006673.1_s300c1, BRDN0000396003
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DIS3L2 (129563)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 129563 DIS3L2 DIS3 like 3'-5' exoribonucl... NM_001257281.2 88.1% 79.1% (many diffs)
2 human 129563 DIS3L2 DIS3 like 3'-5' exoribonucl... NM_152383.4 69% 62.6% (many diffs)
3 human 129563 DIS3L2 DIS3 like 3'-5' exoribonucl... NR_046476.2 55.6% (many diffs)
4 human 129563 DIS3L2 DIS3 like 3'-5' exoribonucl... NR_046477.2 43.3% (many diffs)
5 human 129563 DIS3L2 DIS3 like 3'-5' exoribonucl... NM_001257282.1 37.8% 36.9% (many diffs)
6 mouse 208718 Dis3l2 DIS3 like 3'-5' exoribonucl... NM_153530.2 60.8% 55.2% (many diffs)
7 mouse 208718 Dis3l2 DIS3 like 3'-5' exoribonucl... NM_001172157.1 59.8% 54.3% (many diffs)
8 mouse 208718 Dis3l2 DIS3 like 3'-5' exoribonucl... XM_030252483.1 59.8% 54.3% (many diffs)
9 mouse 208718 Dis3l2 DIS3 like 3'-5' exoribonucl... XM_006529298.3 56.2% 50.6% (many diffs)
10 mouse 208718 Dis3l2 DIS3 like 3'-5' exoribonucl... XM_017319469.2 52.4% 46.7% (many diffs)
11 mouse 208718 Dis3l2 DIS3 like 3'-5' exoribonucl... XM_006529300.4 41.3% 37.7% (many diffs)
12 mouse 208718 Dis3l2 DIS3 like 3'-5' exoribonucl... XM_006529301.4 41.3% 37.7% (many diffs)
13 mouse 208718 Dis3l2 DIS3 like 3'-5' exoribonucl... XM_030252485.1 41.3% 37.7% (many diffs)
14 mouse 208718 Dis3l2 DIS3 like 3'-5' exoribonucl... XM_030252488.1 41.3% 37.7% (many diffs)
15 mouse 208718 Dis3l2 DIS3 like 3'-5' exoribonucl... XM_030252497.1 37.6% 33.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1902
ORF length:
1836
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA CCTCCGGTCC CTGGGGACCC ACAGAGGTGT GTCTGCTGTG GCTGGTCCAC
121ATGACATTGG TGCTTCGCCA GGTGACAAAA AGTCAAAGAA CAGGTCCACA CGAGGGAAGA
181AAAAGAGCAT ATTTGAAACT TACATGTCCA AGGAGGATGT TTCAGAAGGC TTGAAGAGAG
241GAACACTCAT CCAGGGTGTA TTGAGAATTA ATCCAAAGAA GTTTCATGAA GCCTTCATTC
301CTTCCCCGGA TGGTGATCGA GACATTTTTA TTGATGGGGT TGTTGCTCGT AATAGAGCCT
361TAAATGGGGA TCTGGTGGTC GTGAAACTGC TTCCCGAGGA GCATTGGAAG GTAGTTAAAC
421CAGAGAGCAA TGACAAAGAA ACAGAAGCTG CGTATGAATC AGATATCCCC GAGGAGCTCT
481GTGGACACCA TCTCCCGCAA CAGTCCCTGA AAAGCTATAA TGACAGTCCT GATGTCATTG
541TAGAGGCTCA GTTTGATGGC AGCGACTCAG AAGATGGACA TGGCATCACA CAAAATGTGC
601TGGTTGATGG TGTTAAGAAA CTCTCAGTTT GTGTTTCTGA GAAAGGAAGA GAGGATGGTG
661ATGCACCGGT TACAAAAGAT GAGACCACCT GCATTTCACA AGACACAAGA GCTTTATCGG
721AGAAATCCCT GCAAAGATCA GCAAAGGTGG TTTACATCTT GGAGAAAAAA CATTCTCGAG
781CAGCAACCGG CTTCCTCAAA CTCTTGGCTG ATAAGAACAG CGAACTGTTT AGGAAATACG
841CCCTGTTTTC TCCCTCAGAC CACCGAGTGC CTAGAATTTA TGTGCCTCTC AAGGACTGTC
901CCCAGGACTT TGTGGCACGG CCTAAAGATT ATGCCAACAC ACTGTTCATC TGCCGCATTG
961TGGACTGGAA GGAGGACTGC AATTTTGCCC TGGGGCAGCT GGCTAAGAGT CTTGGGCAGG
1021CTGGTGAAAT TGAGCCTGAA ACAGAAGGAA TACTAACAGA GTATGGCGTG GATTTCTCTG
1081ATTTCTCTTC AGAAGTTCTA GAATGTCTTC CTCAAGGCCT GCCATGGACA ATTCCACCAG
1141AGGAGTTCAG CAAGAGAAGG GATTTAAGAA AAGACTGTAT CTTCACCATT GACCCATCAA
1201CCGCCCGAGA CCTCGATGAT GCCCTCTCCT GCAAGCCACT CGCTGACGGC AACTTCAAAG
1261TGGGAGTTCA CATTGCTGAC GTGAGTTACT TTGTTCCGGA GGGATCTGAT CTGGATAAAG
1321TGGCTGCCGA GAGGGCTACA AGCGTCTACT TGGTTCAAAA GGTGGTCCCC ATGCTTCCCA
1381GGCTGCTGTG TGAGGAGCTG TGCAGCCTCA ACCCCATGTC CGACAAGCTG ACCTTCTCTG
1441TGATCTGGAC ACTGACTCCA GAGGGCAAGA TCCTTGATGA ATGGTTTGGC CGGACCATCA
1501TCCGCTCCTG CACCAAACTT AGCTACGAGC ATGCACAGAG CATGATTGAA AGCCCAACTG
1561AGAAAATCCC TGCGAAAGAG CTGCCCCCCA TTTCCCCAGA GCATAGCAGC GAGGAGGTAC
1621ACCAGGCCGT CTTGAATCTC CACGGAATTG CCAAGCAGTT ACGCCAGCAG CGCTTTGTGG
1681ACGGCGCACT TCGTTTGGAT CAGCTAAAGC TTGCTTTCAC TCTGGACCAC GAGACCGGAT
1741TGCCTCAAGG ATGTCATATC TATGAGTACC GCGAGAGCAA CAAGCCCTGC TGCGCCGGCA
1801CCCCCCGCCC CAAACAAGGA TGCTCAGTGA CCTGGTGGAA TTCTGCGACC AGATGGGGCT
1861GCCCGTGGAC TTCAGCTCCG CAGGAGCCCT CAATAAAAGC CTGCCCAACT TTCTTGTACA
1921AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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