Transcript: Mouse XM_030252488.1

PREDICTED: Mus musculus DIS3 like 3'-5' exoribonuclease 2 (Dis3l2), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Dis3l2 (208718)
Length:
3343
CDS:
1001..2992

Additional Resources:

NCBI RefSeq record:
XM_030252488.1
NBCI Gene record:
Dis3l2 (208718)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_030252488.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000120757 GCTCGTAATAGAGCCTTAAAT pLKO.1 500 5UTR 100% 15.000 21.000 N Dis3l2 n/a
2 TRCN0000158942 GCTCGTAATAGAGCCTTAAAT pLKO.1 500 5UTR 100% 15.000 21.000 N DIS3L2 n/a
3 TRCN0000120759 TGCTCGTAATAGAGCCTTAAA pLKO.1 499 5UTR 100% 13.200 18.480 N Dis3l2 n/a
4 TRCN0000120758 CCGACCTAAAGACTTTGCCAA pLKO.1 1246 CDS 100% 2.640 3.696 N Dis3l2 n/a
5 TRCN0000120761 CCAGAGAGCAATGACAAAGAA pLKO.1 755 5UTR 100% 5.625 3.938 N Dis3l2 n/a
6 TRCN0000120760 CCTGAAGGCAAGATCCTTGAA pLKO.1 1787 CDS 100% 4.950 3.465 N Dis3l2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_030252488.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13145 pDONR223 100% 41.3% 37.7% None (many diffs) n/a
2 ccsbBroad304_13145 pLX_304 0% 41.3% 37.7% V5 (many diffs) n/a
3 TRCN0000473439 GATGTAGTATCCAACTTCATTTTG pLX_317 21.7% 41.3% 37.7% V5 (many diffs) n/a
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