Construct: ORF ccsbBroadEn_13170

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011507.1_s300c1, BRDN0000397271
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCLT1 (132320)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 132320 SCLT1 sodium channel and clathrin... NM_001300897.2 100% 100%
2 human 132320 SCLT1 sodium channel and clathrin... NM_001300898.2 59.7% 59.5% 235_236delAAinsGC;238_393del
3 human 132320 SCLT1 sodium channel and clathrin... XM_017007718.2 11.9% 11.8% 235_236delAAinsGC;238_1971del
4 human 132320 SCLT1 sodium channel and clathrin... XM_017007717.2 11.4% 11.4% 235_236delAAinsGC;238_2052del
5 human 132320 SCLT1 sodium channel and clathrin... NM_144643.4 11.3% 11.3% 235_236delAAinsGC;238_2064del
6 human 132320 SCLT1 sodium channel and clathrin... XM_017007716.2 11.3% 11.2% 235_236delAAinsGC;238_2076del
7 human 132320 SCLT1 sodium channel and clathrin... XR_001741126.2 10.1% 1_477del;712_713delAAinsGC;715_2318del
8 human 132320 SCLT1 sodium channel and clathrin... XR_001741131.2 9.3% 1_477del;712_713delAAinsGC;715_2505del
9 human 132320 SCLT1 sodium channel and clathrin... XR_001741129.2 9.1% 1_477del;712_713delAAinsGC;715_2576del
10 human 132320 SCLT1 sodium channel and clathrin... XR_427528.3 8.2% 1_477del;712_713delAAinsGC;715_2835del
11 human 132320 SCLT1 sodium channel and clathrin... XR_001741128.2 8.2% 1_477del;712_713delAAinsGC;715_2847del
12 human 132320 SCLT1 sodium channel and clathrin... XR_001741130.2 8% 1_477del;712_713delAAinsGC;715_2931del
13 human 132320 SCLT1 sodium channel and clathrin... XR_002959708.1 7.7% 1_477del;712_713delAAinsGC;715_3025del
14 human 132320 SCLT1 sodium channel and clathrin... XR_001741127.2 7.4% 1_477del;712_713delAAinsGC;715_3139del
15 human 132320 SCLT1 sodium channel and clathrin... XR_938689.2 7.3% 1_477del;712_713delAAinsGC;715_3218del
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
303
ORF length:
237
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGCAGAAATC GACTTTCTGA GAGAGCAAAA TCGAAGACTA AATGAAGATT
121TTAGGCGGTA TCAAATGGAA AGTTTTTCCA AATATTCATC TGTACAGAAA GCTGTCTGCC
181AAGGAGAAGG AGACGACACA TTTGAAAACC TAGTATTTGA CCAAAGCTTT TTAGCTCCTC
241TTGTTACTGA GTATGATAAA CACCTAGGAG AACTAAATGG GCAGCTGAAA TATTACCAGG
301CATACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
361gcaacgaac

Download FASTA (ORF) (Full)