Transcript: Human XM_017007717.2

PREDICTED: Homo sapiens sodium channel and clathrin linker 1 (SCLT1), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SCLT1 (132320)
Length:
4740
CDS:
478..2532

Additional Resources:

NCBI RefSeq record:
XM_017007717.2
NBCI Gene record:
SCLT1 (132320)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017007717.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000423027 GAGGTAGGAACTGACATATAT pLKO_005 829 CDS 100% 15.000 21.000 N SCLT1 n/a
2 TRCN0000412856 GCCAAATTGAACGAGTCATTA pLKO_005 1715 CDS 100% 13.200 18.480 N SCLT1 n/a
3 TRCN0000429771 ATATGACTGAGGCCCAGATTC pLKO_005 980 CDS 100% 10.800 15.120 N SCLT1 n/a
4 TRCN0000424884 TGTACAAGATGCTACCATAAG pLKO_005 1590 CDS 100% 10.800 15.120 N SCLT1 n/a
5 TRCN0000137249 GCCAACCAATTAAGAACCGAA pLKO.1 1369 CDS 100% 2.640 3.696 N SCLT1 n/a
6 TRCN0000414063 CAGACTTCAAAGGCGTCTAAG pLKO_005 2436 CDS 100% 10.800 8.640 N SCLT1 n/a
7 TRCN0000435022 GAAGCATCAGATAGGCGTTTA pLKO_005 1288 CDS 100% 10.800 8.640 N SCLT1 n/a
8 TRCN0000415145 GCAGTTACAGTCTAGTATAAA pLKO_005 1311 CDS 100% 15.000 10.500 N SCLT1 n/a
9 TRCN0000431350 TCAATAAAGGAACGTGGATTT pLKO_005 2146 CDS 100% 10.800 7.560 N SCLT1 n/a
10 TRCN0000137303 GAAGAACTTTCAGCCCTTCAA pLKO.1 1672 CDS 100% 4.950 3.465 N SCLT1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017007717.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13170 pDONR223 100% 11.4% 11.4% None 235_236delAAinsGC;238_2052del n/a
2 ccsbBroad304_13170 pLX_304 0% 11.4% 11.4% V5 235_236delAAinsGC;238_2052del n/a
3 TRCN0000466235 TGCCGGTGGAACGACGATTACGGG pLX_317 100% 11.4% 11.4% V5 235_236delAAinsGC;238_2052del n/a
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