Construct: ORF ccsbBroadEn_13291

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009072.1_s300c1, BRDN0000457289
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DAB2IP (153090)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 153090 DAB2IP DAB2 interacting protein NM_138709.2 97.2% 97.1% 3101delG;3105_3106delCAinsT;3111_3195del
2 human 153090 DAB2IP DAB2 interacting protein XM_011518270.2 97.2% 97.1% 3101delG;3105_3106delCAinsT;3111_3195del
3 human 153090 DAB2IP DAB2 interacting protein XM_011518271.2 97.2% 97.1% 3101delG;3105_3106delCAinsT;3111_3195del
4 human 153090 DAB2IP DAB2 interacting protein XM_017014300.1 97.2% 97.1% 3101delG;3105_3106delCAinsT;3111_3195del
5 human 153090 DAB2IP DAB2 interacting protein XM_024447418.1 92% 92% (many diffs)
6 human 153090 DAB2IP DAB2 interacting protein XM_024447417.1 91.8% 91.7% (many diffs)
7 human 153090 DAB2IP DAB2 interacting protein NM_032552.3 91.5% 91.5% 1_288del
8 human 153090 DAB2IP DAB2 interacting protein XM_017014299.1 90.7% 90.7% (many diffs)
9 human 153090 DAB2IP DAB2 interacting protein XM_011518266.2 89.8% 89.8% 1_351del
10 human 153090 DAB2IP DAB2 interacting protein XM_005251721.1 89.2% 89.1% (many diffs)
11 human 153090 DAB2IP DAB2 interacting protein XM_017014298.2 88.9% 88.9% (many diffs)
12 human 153090 DAB2IP DAB2 interacting protein XM_011518267.2 87.9% 87.9% 1_351del;2056_2057ins66
13 human 153090 DAB2IP DAB2 interacting protein XM_011518264.3 87.6% 87.5% (many diffs)
14 human 153090 DAB2IP DAB2 interacting protein XM_005251719.4 87.1% 87% (many diffs)
15 human 153090 DAB2IP DAB2 interacting protein XM_011518265.3 85.7% 85.7% (many diffs)
16 mouse 69601 Dab2ip disabled 2 interacting protein NM_001290639.1 87.3% 94.8% (many diffs)
17 mouse 69601 Dab2ip disabled 2 interacting protein NM_001290641.1 87.3% 94.8% (many diffs)
18 mouse 69601 Dab2ip disabled 2 interacting protein XM_006498307.2 87.3% 94.8% (many diffs)
19 mouse 69601 Dab2ip disabled 2 interacting protein XM_017319251.1 85.2% 92.7% (many diffs)
20 mouse 69601 Dab2ip disabled 2 interacting protein NM_001290640.1 83.6% 90.8% (many diffs)
21 mouse 69601 Dab2ip disabled 2 interacting protein XM_011239175.1 83% 90.6% (many diffs)
22 mouse 69601 Dab2ip disabled 2 interacting protein XM_011239173.2 82.8% 90.1% (many diffs)
23 mouse 69601 Dab2ip disabled 2 interacting protein NM_001001602.2 82.8% 89.8% (many diffs)
24 mouse 69601 Dab2ip disabled 2 interacting protein NM_001114125.1 82.2% 89.3% (many diffs)
25 mouse 69601 Dab2ip disabled 2 interacting protein XM_006498311.1 82.2% 89.2% (many diffs)
26 mouse 69601 Dab2ip disabled 2 interacting protein XM_011239174.1 80.7% 88% (many diffs)
27 mouse 69601 Dab2ip disabled 2 interacting protein NM_001290637.1 80.5% 87.4% (many diffs)
28 mouse 69601 Dab2ip disabled 2 interacting protein XM_006498305.3 80.1% 86.9% (many diffs)
29 mouse 69601 Dab2ip disabled 2 interacting protein XM_006498304.3 78.7% 85.4% (many diffs)
30 mouse 69601 Dab2ip disabled 2 interacting protein NM_001114124.2 78.2% 84.9% (many diffs)
31 mouse 69601 Dab2ip disabled 2 interacting protein XM_011239172.2 76.4% 83% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3177
ORF length:
3108
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCCGAGGCTG AAGGAGTCTC GCTCCCACGA GTCCCTGCTC AGCCCCAGCA
121GTGCGGTGGA GGCGCTGGAC CTCAGCATGG AGGAAGAGGT GGTCATCAAG CCCGTGCACA
181GCAGCATCCT TGGCCAGGAC TACTGCTTCG AGGTGACGAC GTCATCAGGA AGCAAGTGCT
241TTTCCTGCCG GTCTGCAGCT GAGCGGGATA AGTGGATGGA GAACCTCCGG CGAGCGGTGC
301ATCCCAACAA GGACAACAGC CGGCGTGTGG AGCACATCCT GAAGCTGTGG GTGATCGAGG
361CCAAGGACCT GCCAGCCAAG AAGAAGTACC TGTGCGAGCT GTGCCTGGAC GATGTGCTCT
421ATGCCCGCAC CACGGGCAAG CTCAAGACGG ACAATGTTTT CTGGGGCGAG CACTTCGAGT
481TCCACAACTT GCCGCCTCTG CGCACGGTCA CTGTCCACCT GTACCGGGAG ACCGACAAGA
541AGAAGAAGAA GGAGCGCAAC AGTTACCTGG GCCTGGTGAG CCTACCTGCT GCCTCGGTGG
601CCGGGCGGCA GTTCGTGGAG AAGTGGTACC CGGTGGTGAC GCCCAACCCC AAGGGCGGCA
661AGGGCCCTGG ACCCATGATC CGCATCAAGG CGCGCTACCA AACCATCACC ATCCTGCCCA
721TGGAGATGTA CAAAGAGTTC GCTGAGCACA TCACCAACCA CTACCTGGGG CTGTGTGCAG
781CCCTCGAGCC CATCCTCAGT GCCAAGACCA AGGAGGAGAT GGCATCTGCC CTGGTGCACA
841TCCTGCAGAG CACGGGCAAG GTGAAGGACT TCCTGACAGA CCTGATGATG TCAGAGGTGG
901ACCGCTGCGG GGACAACGAG CACCTCATCT TCCGGGAGAA CACACTGGCC ACCAAGGCCA
961TTGAGGAGTA CCTCAAGCTA GTGGGCCAGA AGTACCTGCA GGACGCCCTA GGTGAGTTCA
1021TCAAAGCGCT GTATGAGTCA GATGAGAACT GCGAAGTGGA TCCCAGCAAG TGCTCGGCCG
1081CTGACCTCCC AGAGCACCAG GGCAACCTCA AGATGTGCTG CGAGCTGGCC TTCTGCAAGA
1141TCATCAACTC CTACTGTGTC TTCCCACGGG AGTTGAAAGA GGTGTTTGCC TCGTGGAGGC
1201AGGAGTGCAG CAGTCGCGGC CGCCCGGACA TCAGTGAGCG GCTCATCAGC GCCTCCCTCT
1261TCCTGCGCTT CCTCTGCCCA GCCATCATGT CGCCCTCACT CTTCAACCTG CTGCAGGAGT
1321ACCCTGATGA CCGCACTGCC CGCACCCTCA CCCTCATCGC CAAGGTCACC CAGAACCTGG
1381CCAACTTTGC CAAATTTGGC AGCAAGGAGG AATACATGTC CTTCATGAAC CAGTTCCTAG
1441AGCATGAGTG GACCAACATG CAGCGCTTCC TGCTGGAGAT CTCCAACCCC GAGACCCTCT
1501CCAATACAGC CGGCTTCGAG GGCTACATCG ACCTGGGCCG CGAGCTCTCC AGCCTGCACT
1561CACTGCTCTG GGAGGCCGTC AGCCAGCTGG AGCAGAGCAT AGTATCCAAA CTGGGACCCC
1621TGCCTCGGAT CCTGAGGGAC GTCCACACAG CACTGAGCAC CCCAGGTAGC GGGCAGCTCC
1681CAGGGACCAA TGACCTGGCC TCCACACCGG GCTCTGGCAG CAGCAGCATC TCAGCTGGGC
1741TGCAGAAGAT GGTGATTGAG AACGATCTTT CCGGTCTGAT AGATTTCACC CGGTTACCGT
1801CTCCAACCCC CGAAAACAAG GACTTGTTTT TTGTCACAAG GTCCTCCGGG GTCCAGCCCT
1861CACCTGCCCG CAGCTCGAGT TACTCGGAAG CCAACGAGCC TGATCTTCAG ATGGCCAACG
1921GTGGCAAGAG CCTCTCCATG GTGGACCTCC AGGACGCCCG CACGCTGGAT GGGGAGGCAG
1981GCTCCCCGGC GGGCCCCGAC GTCCTCCCCA CAGATGGGCA GGCCGCTGCA GCTCAGCTGG
2041TGGCCGGGTG GCCGGCCCGG GCAACCCCAG TGAACCTGGC AGGGCTGGCC ACGGTGCGGC
2101GGGCAGGCCA GACACCAACC ACACCAGGCA CCTCCGAGGG CGCGCCAGGC CGGCCCCAGC
2161TGTTGGCACC GCTCTCCTTC CAGAACCCTG TGTACCAGAT GGCGGCTGGC CTGCCGCTGT
2221CACCCCGTGG CCTTGGCGAC TCAGGCTCTG AGGGCCACAG CTCCCTGAGC TCACACAGCA
2281ACAGCGAGGA GTTGGCGGCT GCTGCCAAGC TGGGAAGTTT CAGCACTGCC GCGGAGGAGC
2341TGGCTCGGCG GCCCGGTGAG CTGGCACGGC GACAGATGTC ACTGACTGAA AAAGGCGGGC
2401AGCCCACGGT GCCACGGCAG AACAGTGCTG GCCCCCAGAG GAGGATCGAC CAGCCTCCGC
2461CCCCACCCCC GCCGCCACCT CCTGCCCCCC GCGGCCGGAC GCCCCCCAAC CTGCTGAGCA
2521CCCTGCAGTA CCCAAGACCC TCAAGCGGAA CCCTGGCGTC GGCCTCACCT GATTGGGTGG
2581GCCCCAGTAC CCGCCTGAGG CAGCAGTCCT CTTCCTCCAA GGGGGACAGC CCAGAACTGA
2641AGCCACGGGC AGTGCACAAG CAGGGCCCTT CACCTGTGAG CCCCAATGCC CTGGACCGCA
2701CAGCCGCTTG GCTCTTGACC ATGAACGCGC AGTTGTTAGA AGACGAGGGC CTGGGCCCAG
2761ACCCCCCCCA CAGGGATAGG CTAAGGAGTA AGGACGAGCT CAGCCAAGCA GAAAAGGACC
2821TGGCGGTGCT GCAGGACAAG CTGCGAATCT CCACCAAGAA GCTGGAGGAG TATGAGACCC
2881TGTTCAAGTG CCAGGAGGAG ACGACGCAGA AGCTGGTGCT GGAGTACCAG GCACGGCTGG
2941AGGAGGGCGA GGAGCGGCTG CGGCGGCAGC AGGAGGACAA GGACATCCAG ATGAAGGGCA
3001TCATCAGCAG GTTGATGTCC GTGGAGGAAG AACTGAAGAA GGACCACGCA GAGATGCAAG
3061CGGCTGTGGA CTCCAAACAG AAGATCATTG ATGCCCAGGA GAAGCGCATT GCCTCGTTGG
3121ATGCCGCCAA TGCCCGCCTC ATGAGTGCCC TGACCCAGCT GAAAGAGAGT ATGCATTTGC
3181CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg
3241aac

Download FASTA (ORF) (Full)

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