Construct: ORF ccsbBroadEn_13291
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009072.1_s300c1, BRDN0000457289
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DAB2IP (153090)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 153090 | DAB2IP | DAB2 interacting protein | NM_138709.2 | 97.2% | 97.1% | 3101delG;3105_3106delCAinsT;3111_3195del |
| 2 | human | 153090 | DAB2IP | DAB2 interacting protein | XM_011518270.2 | 97.2% | 97.1% | 3101delG;3105_3106delCAinsT;3111_3195del |
| 3 | human | 153090 | DAB2IP | DAB2 interacting protein | XM_011518271.2 | 97.2% | 97.1% | 3101delG;3105_3106delCAinsT;3111_3195del |
| 4 | human | 153090 | DAB2IP | DAB2 interacting protein | XM_017014300.1 | 97.2% | 97.1% | 3101delG;3105_3106delCAinsT;3111_3195del |
| 5 | human | 153090 | DAB2IP | DAB2 interacting protein | XM_024447418.1 | 92% | 92% | (many diffs) |
| 6 | human | 153090 | DAB2IP | DAB2 interacting protein | XM_024447417.1 | 91.8% | 91.7% | (many diffs) |
| 7 | human | 153090 | DAB2IP | DAB2 interacting protein | NM_032552.3 | 91.5% | 91.5% | 1_288del |
| 8 | human | 153090 | DAB2IP | DAB2 interacting protein | XM_017014299.1 | 90.7% | 90.7% | (many diffs) |
| 9 | human | 153090 | DAB2IP | DAB2 interacting protein | XM_011518266.2 | 89.8% | 89.8% | 1_351del |
| 10 | human | 153090 | DAB2IP | DAB2 interacting protein | XM_005251721.1 | 89.2% | 89.1% | (many diffs) |
| 11 | human | 153090 | DAB2IP | DAB2 interacting protein | XM_017014298.2 | 88.9% | 88.9% | (many diffs) |
| 12 | human | 153090 | DAB2IP | DAB2 interacting protein | XM_011518267.2 | 87.9% | 87.9% | 1_351del;2056_2057ins66 |
| 13 | human | 153090 | DAB2IP | DAB2 interacting protein | XM_011518264.3 | 87.6% | 87.5% | (many diffs) |
| 14 | human | 153090 | DAB2IP | DAB2 interacting protein | XM_005251719.4 | 87.1% | 87% | (many diffs) |
| 15 | human | 153090 | DAB2IP | DAB2 interacting protein | XM_011518265.3 | 85.7% | 85.7% | (many diffs) |
| 16 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | NM_001290639.1 | 87.3% | 94.8% | (many diffs) |
| 17 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | NM_001290641.1 | 87.3% | 94.8% | (many diffs) |
| 18 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | XM_006498307.2 | 87.3% | 94.8% | (many diffs) |
| 19 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | XM_017319251.1 | 85.2% | 92.7% | (many diffs) |
| 20 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | NM_001290640.1 | 83.6% | 90.8% | (many diffs) |
| 21 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | XM_011239175.1 | 83% | 90.6% | (many diffs) |
| 22 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | XM_011239173.2 | 82.8% | 90.1% | (many diffs) |
| 23 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | NM_001001602.2 | 82.8% | 89.8% | (many diffs) |
| 24 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | NM_001114125.1 | 82.2% | 89.3% | (many diffs) |
| 25 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | XM_006498311.1 | 82.2% | 89.2% | (many diffs) |
| 26 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | XM_011239174.1 | 80.7% | 88% | (many diffs) |
| 27 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | NM_001290637.1 | 80.5% | 87.4% | (many diffs) |
| 28 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | XM_006498305.3 | 80.1% | 86.9% | (many diffs) |
| 29 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | XM_006498304.3 | 78.7% | 85.4% | (many diffs) |
| 30 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | NM_001114124.2 | 78.2% | 84.9% | (many diffs) |
| 31 | mouse | 69601 | Dab2ip | disabled 2 interacting protein | XM_011239172.2 | 76.4% | 83% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3177
- ORF length:
- 3108
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCCGAGGCTG AAGGAGTCTC GCTCCCACGA GTCCCTGCTC AGCCCCAGCA 121 GTGCGGTGGA GGCGCTGGAC CTCAGCATGG AGGAAGAGGT GGTCATCAAG CCCGTGCACA 181 GCAGCATCCT TGGCCAGGAC TACTGCTTCG AGGTGACGAC GTCATCAGGA AGCAAGTGCT 241 TTTCCTGCCG GTCTGCAGCT GAGCGGGATA AGTGGATGGA GAACCTCCGG CGAGCGGTGC 301 ATCCCAACAA GGACAACAGC CGGCGTGTGG AGCACATCCT GAAGCTGTGG GTGATCGAGG 361 CCAAGGACCT GCCAGCCAAG AAGAAGTACC TGTGCGAGCT GTGCCTGGAC GATGTGCTCT 421 ATGCCCGCAC CACGGGCAAG CTCAAGACGG ACAATGTTTT CTGGGGCGAG CACTTCGAGT 481 TCCACAACTT GCCGCCTCTG CGCACGGTCA CTGTCCACCT GTACCGGGAG ACCGACAAGA 541 AGAAGAAGAA GGAGCGCAAC AGTTACCTGG GCCTGGTGAG CCTACCTGCT GCCTCGGTGG 601 CCGGGCGGCA GTTCGTGGAG AAGTGGTACC CGGTGGTGAC GCCCAACCCC AAGGGCGGCA 661 AGGGCCCTGG ACCCATGATC CGCATCAAGG CGCGCTACCA AACCATCACC ATCCTGCCCA 721 TGGAGATGTA CAAAGAGTTC GCTGAGCACA TCACCAACCA CTACCTGGGG CTGTGTGCAG 781 CCCTCGAGCC CATCCTCAGT GCCAAGACCA AGGAGGAGAT GGCATCTGCC CTGGTGCACA 841 TCCTGCAGAG CACGGGCAAG GTGAAGGACT TCCTGACAGA CCTGATGATG TCAGAGGTGG 901 ACCGCTGCGG GGACAACGAG CACCTCATCT TCCGGGAGAA CACACTGGCC ACCAAGGCCA 961 TTGAGGAGTA CCTCAAGCTA GTGGGCCAGA AGTACCTGCA GGACGCCCTA GGTGAGTTCA 1021 TCAAAGCGCT GTATGAGTCA GATGAGAACT GCGAAGTGGA TCCCAGCAAG TGCTCGGCCG 1081 CTGACCTCCC AGAGCACCAG GGCAACCTCA AGATGTGCTG CGAGCTGGCC TTCTGCAAGA 1141 TCATCAACTC CTACTGTGTC TTCCCACGGG AGTTGAAAGA GGTGTTTGCC TCGTGGAGGC 1201 AGGAGTGCAG CAGTCGCGGC CGCCCGGACA TCAGTGAGCG GCTCATCAGC GCCTCCCTCT 1261 TCCTGCGCTT CCTCTGCCCA GCCATCATGT CGCCCTCACT CTTCAACCTG CTGCAGGAGT 1321 ACCCTGATGA CCGCACTGCC CGCACCCTCA CCCTCATCGC CAAGGTCACC CAGAACCTGG 1381 CCAACTTTGC CAAATTTGGC AGCAAGGAGG AATACATGTC CTTCATGAAC CAGTTCCTAG 1441 AGCATGAGTG GACCAACATG CAGCGCTTCC TGCTGGAGAT CTCCAACCCC GAGACCCTCT 1501 CCAATACAGC CGGCTTCGAG GGCTACATCG ACCTGGGCCG CGAGCTCTCC AGCCTGCACT 1561 CACTGCTCTG GGAGGCCGTC AGCCAGCTGG AGCAGAGCAT AGTATCCAAA CTGGGACCCC 1621 TGCCTCGGAT CCTGAGGGAC GTCCACACAG CACTGAGCAC CCCAGGTAGC GGGCAGCTCC 1681 CAGGGACCAA TGACCTGGCC TCCACACCGG GCTCTGGCAG CAGCAGCATC TCAGCTGGGC 1741 TGCAGAAGAT GGTGATTGAG AACGATCTTT CCGGTCTGAT AGATTTCACC CGGTTACCGT 1801 CTCCAACCCC CGAAAACAAG GACTTGTTTT TTGTCACAAG GTCCTCCGGG GTCCAGCCCT 1861 CACCTGCCCG CAGCTCGAGT TACTCGGAAG CCAACGAGCC TGATCTTCAG ATGGCCAACG 1921 GTGGCAAGAG CCTCTCCATG GTGGACCTCC AGGACGCCCG CACGCTGGAT GGGGAGGCAG 1981 GCTCCCCGGC GGGCCCCGAC GTCCTCCCCA CAGATGGGCA GGCCGCTGCA GCTCAGCTGG 2041 TGGCCGGGTG GCCGGCCCGG GCAACCCCAG TGAACCTGGC AGGGCTGGCC ACGGTGCGGC 2101 GGGCAGGCCA GACACCAACC ACACCAGGCA CCTCCGAGGG CGCGCCAGGC CGGCCCCAGC 2161 TGTTGGCACC GCTCTCCTTC CAGAACCCTG TGTACCAGAT GGCGGCTGGC CTGCCGCTGT 2221 CACCCCGTGG CCTTGGCGAC TCAGGCTCTG AGGGCCACAG CTCCCTGAGC TCACACAGCA 2281 ACAGCGAGGA GTTGGCGGCT GCTGCCAAGC TGGGAAGTTT CAGCACTGCC GCGGAGGAGC 2341 TGGCTCGGCG GCCCGGTGAG CTGGCACGGC GACAGATGTC ACTGACTGAA AAAGGCGGGC 2401 AGCCCACGGT GCCACGGCAG AACAGTGCTG GCCCCCAGAG GAGGATCGAC CAGCCTCCGC 2461 CCCCACCCCC GCCGCCACCT CCTGCCCCCC GCGGCCGGAC GCCCCCCAAC CTGCTGAGCA 2521 CCCTGCAGTA CCCAAGACCC TCAAGCGGAA CCCTGGCGTC GGCCTCACCT GATTGGGTGG 2581 GCCCCAGTAC CCGCCTGAGG CAGCAGTCCT CTTCCTCCAA GGGGGACAGC CCAGAACTGA 2641 AGCCACGGGC AGTGCACAAG CAGGGCCCTT CACCTGTGAG CCCCAATGCC CTGGACCGCA 2701 CAGCCGCTTG GCTCTTGACC ATGAACGCGC AGTTGTTAGA AGACGAGGGC CTGGGCCCAG 2761 ACCCCCCCCA CAGGGATAGG CTAAGGAGTA AGGACGAGCT CAGCCAAGCA GAAAAGGACC 2821 TGGCGGTGCT GCAGGACAAG CTGCGAATCT CCACCAAGAA GCTGGAGGAG TATGAGACCC 2881 TGTTCAAGTG CCAGGAGGAG ACGACGCAGA AGCTGGTGCT GGAGTACCAG GCACGGCTGG 2941 AGGAGGGCGA GGAGCGGCTG CGGCGGCAGC AGGAGGACAA GGACATCCAG ATGAAGGGCA 3001 TCATCAGCAG GTTGATGTCC GTGGAGGAAG AACTGAAGAA GGACCACGCA GAGATGCAAG 3061 CGGCTGTGGA CTCCAAACAG AAGATCATTG ATGCCCAGGA GAAGCGCATT GCCTCGTTGG 3121 ATGCCGCCAA TGCCCGCCTC ATGAGTGCCC TGACCCAGCT GAAAGAGAGT ATGCATTTGC 3181 CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg 3241 aac