Transcript: Mouse XM_011239173.2

PREDICTED: Mus musculus disabled 2 interacting protein (Dab2ip), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Dab2ip (69601)
Length:
5790
CDS:
11..3055

Additional Resources:

NCBI RefSeq record:
XM_011239173.2
NBCI Gene record:
Dab2ip (69601)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011239173.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000027705 GAGGTGATTATCAAGCCCGTT pLKO.1 98 CDS 100% 2.160 3.024 N Dab2ip n/a
2 TRCN0000321657 GAGGTGATTATCAAGCCCGTT pLKO_005 98 CDS 100% 2.160 3.024 N Dab2ip n/a
3 TRCN0000321658 GAGCGCACTGCATGGGAAATA pLKO_005 4005 3UTR 100% 13.200 9.240 N Dab2ip n/a
4 TRCN0000422206 GCAAGCTCAAGACGGACAATG pLKO_005 378 CDS 100% 10.800 7.560 N DAB2IP n/a
5 TRCN0000027760 CGGCCAAGAAGAAGTATCTAT pLKO.1 315 CDS 100% 5.625 3.938 N Dab2ip n/a
6 TRCN0000027729 AGCTGTAGATTCCAAACAGAA pLKO.1 2851 CDS 100% 4.950 3.465 N Dab2ip n/a
7 TRCN0000027740 GCTCTGTATGAGTCAGATGAA pLKO.1 968 CDS 100% 4.950 3.465 N Dab2ip n/a
8 TRCN0000321725 GCTCTGTATGAGTCAGATGAA pLKO_005 968 CDS 100% 4.950 3.465 N Dab2ip n/a
9 TRCN0000027741 GCAGTGCTACAAGACAAGCTA pLKO.1 2612 CDS 100% 3.000 2.100 N Dab2ip n/a
10 TRCN0000321726 GCAGTGCTACAAGACAAGCTA pLKO_005 2612 CDS 100% 3.000 2.100 N Dab2ip n/a
11 TRCN0000001461 GCACATCACTAACCACTACCT pLKO.1 688 CDS 100% 2.640 1.848 N DAB2IP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011239173.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13291 pDONR223 100% 82.8% 90.1% None (many diffs) n/a
2 ccsbBroad304_13291 pLX_304 0% 82.8% 90.1% V5 (many diffs) n/a
3 TRCN0000476703 GCTCTAGTGTACCAACGTGGAGAT pLX_317 12.3% 82.8% 90.1% V5 (many diffs) n/a
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