Construct: ORF ccsbBroadEn_13295

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015789.1_s300c1, BRDN0000398164
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
AMOT (154796)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 154796 AMOT angiomotin NM_133265.3 99.8% 99.8% 1853_1854insTCC
2 human 154796 AMOT angiomotin XM_005262090.1 99.8% 99.8% 1853_1854insTCC
3 human 154796 AMOT angiomotin XM_017029289.1 99.8% 99.8% 1853_1854insTCC
4 human 154796 AMOT angiomotin NM_001113490.1 62.2% 62.2% 1_1227del;3080_3081insTCC
5 human 154796 AMOT angiomotin XM_005262087.1 62.2% 62.2% 1_1227del;3080_3081insTCC
6 human 154796 AMOT angiomotin XM_011530875.2 62.2% 62.2% 1_1227del;3080_3081insTCC
7 mouse 27494 Amot angiomotin XM_006528867.3 70.4% 72% (many diffs)
8 mouse 27494 Amot angiomotin NM_153319.3 52.4% 53.6% (many diffs)
9 mouse 27494 Amot angiomotin XM_006528864.3 52.4% 53.6% (many diffs)
10 mouse 27494 Amot angiomotin XM_011247828.2 52.4% 53.6% (many diffs)
11 mouse 27494 Amot angiomotin NM_001290274.1 36.9% 38.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2097
ORF length:
2028
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCCTCGGGCT CAGCCATCCT CTGCTTCTTA TCAGCCAGTG CCAGCAGACC
121CTTTTGCCAT TGTTTCCAGA GCCCAGCAGA TGGTTGAGAT CCTCTCAGAC GAGAACCGGA
181ACTTGAGGCA AGAGTTGGAA GGATGCTATG AGAAGGTGGC AAGACTGCAG AAGGTGGAGA
241CAGAAATCCA GCGCGTCTCG GAGGCATATG AGAACCTCGT GAAGTCATCC TCCAAAAGAG
301AGGCCCTAGA GAAAGCCATG AGAAACAAGC TAGAGGGCGA GATTCGGAGG ATGCATGATT
361TCAACAGGGA TCTGAGAGAG CGTCTAGAGA CTGCCAACAA GCAGCTTGCA GAGAAGGAAT
421ATGAGGGGTC AGAGGACACC AGAAAAACCA TCTCGCAGCT CTTTGCAAAA AATAAAGAAA
481GCCAGCGTGA GAAGGAGAAG CTGGAAGCGG AGCTGGCCAC TGCCCGTTCT ACCAATGAGG
541ACCAAAGACG ACACATCGAA ATCCGAGATC AGGCCCTGAG TAATGCCCAG GCCAAGGTGG
601TAAAGCTGGA AGAAGAGCTG AAAAAGAAGC AAGTGTACGT TGACAAGGTG GAGAAGATGC
661AGCAGGCCCT TGTACAGCTC CAGGCAGCAT GTGAAAAACG TGAGCAGCTA GAGCACCGTC
721TCCGGACACG ACTGGAGAGG GAACTGGAAT CCCTGAGAAT CCAGCAGCGT CAGGGCAACT
781GTCAGCCCAC CAACGTTTCA GAATACAATG CTGCTGCACT GATGGAGCTC CTTCGGGAGA
841AAGAGGAGAG GATTCTGGCT CTGGAAGCTG ATATGACAAA GTGGGAGCAG AAATATTTGG
901AGGAGAATGT GATGAGACAT TTTGCTCTGG ATGCTGCTGC AACTGTGGCT GCTCAGAGGG
961ACACAACAGT CATCAGTCAC TCTCCTAACA CCAGCTATGA CACAGCTCTA GAAGCTCGCA
1021TCCAGAAAGA GGAGGAAGAA ATCTTGATGG CCAATAAGCG TTGCCTTGAC ATGGAGGGCA
1081GGATTAAGAC CCTCCATGCC CAGATTATTG AGAAGGATGC CATGATCAAA GTACTCCAGC
1141AGCGTTCCCG GAAGGAGCCG AGCAAGACAG AGCAGCTGTC GTGCATGCGG CCAGCGAAGT
1201CTCTGATGTC CATTTCCAAT GCTGGATCAG GCTTGCTCTC CCACTCATCC ACCCTGACTG
1261GCTCCCCCAT CATGGAAGAA AAGCGAGACG ACAAGAGCTG GAAGGGGAGC CTAGGCATTC
1321TCCTGGGTGG AGACTACCGT GCTGAATATG TCCCTTCCAC ACCCTCGCCT GTGCCACCCT
1381CGACTCCCCT GCTCTCGGCT CACTCCAAGA CAGGCAGCCG AGACTGCAGT ACCCAAACTG
1441AACGTGGGAC GGAATCGAAC AAAACTGCAG CTGTTGCTCC CATCTCTGTT CCTGCTCCAG
1501TTGCTGCTGC CGCCACTGCT GCCGCCATCA CTGCCACTGC TGCCACCATC ACCACCACCA
1561TGGTAGCTGC TGCTCCAGTT GCTGTTGCTG CTGCTGCTGC TCCAGCTGCT GCTGCTGCCC
1621CGTCTCCAGC CACTGCCGCT GCTACTGCTG CTGCTGTTTC TCCAGCTGCT GCTGGTCAGA
1681TTCCAGCTGC TGCCTCTGTT GCCTCAGCTG CTGCCGTTGC TCCTTCTGCT GCTGCTGCTG
1741CTGCTGTTCA GGTTGCTCCA GCTGCTCCGG CTCCAGTTCC AGCTCCGGCT CTGGTTCCGG
1801TTCCAGCTCC AGCAGCGGCT CAGGCTTCTG CTCCTGCTCA GACTCAGGCA CCAACTTCAG
1861CTCCGGCTGT GGCTCCAACT CCAGCTCCAA CTCCAACTCC AGCTGTGGCT CAGGCTGAGG
1921TTCCTCCTGC AAGTCCAGCT ACCGGTCCTG GACCACATCG TTTGTCTATA CCAAGTTTGA
1981CCTGCAATCC AGACAAAACA GATGGGCCTG TGTTCCACTC CAATACTCTG GAAAGAAAAA
2041CTCCCATTCA GATCCTGGGA CAAGAGCCTG ATGCAGAGAT GGTGGAATAT CTCATCTTGC
2101CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
2161aac

Download FASTA (ORF) (Full)

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