Transcript: Human NM_001113490.1

Homo sapiens angiomotin (AMOT), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-04
Taxon:
Homo sapiens (human)
Gene:
AMOT (154796)
Length:
6945
CDS:
1..3255

Additional Resources:

NCBI RefSeq record:
NM_001113490.1
NBCI Gene record:
AMOT (154796)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001113490.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000160957 GAAGCAAGTGTACGTTGACAA pLKO.1 1785 CDS 100% 4.950 6.930 N AMOT n/a
2 TRCN0000166812 CGACACATCGAAATCCGAGAT pLKO.1 1708 CDS 100% 4.050 5.670 N AMOT n/a
3 TRCN0000351617 CGACACATCGAAATCCGAGAT pLKO_005 1708 CDS 100% 4.050 5.670 N AMOT n/a
4 TRCN0000162161 CTCTGGAAGCTGATATGACAA pLKO.1 2018 CDS 100% 4.950 3.465 N AMOT n/a
5 TRCN0000159177 GAAGAAATCTTGATGGCCAAT pLKO.1 2194 CDS 100% 4.050 2.835 N AMOT n/a
6 TRCN0000165373 GCAAGAGTTGGAAGGATGCTA pLKO.1 1347 CDS 100% 3.000 2.100 N AMOT n/a
7 TRCN0000342987 GCAAGAGTTGGAAGGATGCTA pLKO_005 1347 CDS 100% 3.000 2.100 N AMOT n/a
8 TRCN0000162010 GATGCAGAGATGGTGGAATAT pLKO.1 3226 CDS 100% 13.200 7.920 N AMOT n/a
9 TRCN0000342981 GATGCAGAGATGGTGGAATAT pLKO_005 3226 CDS 100% 13.200 7.920 N AMOT n/a
10 TRCN0000162009 GAGGAGAATGTGATGAGACAT pLKO.1 2059 CDS 100% 4.950 2.970 N AMOT n/a
11 TRCN0000343044 GAGGAGAATGTGATGAGACAT pLKO_005 2059 CDS 100% 4.950 2.970 N AMOT n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001113490.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13295 pDONR223 100% 62.2% 62.2% None 1_1227del;3080_3081insTCC n/a
2 ccsbBroad304_13295 pLX_304 0% 62.2% 62.2% V5 1_1227del;3080_3081insTCC n/a
3 TRCN0000465916 CCATCAGTCGCCGTTGCAGCGCGC pLX_317 15.7% 62.2% 62.2% V5 1_1227del;3080_3081insTCC n/a
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