Construct: ORF ccsbBroadEn_13336

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015561.1_s300c1, BRDN0000395885
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DENND1B (163486)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 163486 DENND1B DENN domain containing 1B NM_001300858.2 99.9% 99.7% 929C>A
2 human 163486 DENND1B DENN domain containing 1B NM_144977.5 90.7% 86.9% (many diffs)
3 human 163486 DENND1B DENN domain containing 1B XM_011509251.3 74.5% 69.3% (many diffs)
4 human 163486 DENND1B DENN domain containing 1B XM_017000471.1 52.6% 51.2% (many diffs)
5 human 163486 DENND1B DENN domain containing 1B XM_006711192.2 51.2% 49.8% (many diffs)
6 human 163486 DENND1B DENN domain containing 1B XM_006711193.3 51.2% 49.8% (many diffs)
7 human 163486 DENND1B DENN domain containing 1B XM_011509249.2 51.2% 49.8% (many diffs)
8 human 163486 DENND1B DENN domain containing 1B XM_017000470.1 51.2% 49.8% (many diffs)
9 human 163486 DENND1B DENN domain containing 1B XM_005244931.2 50.9% 47.7% (many diffs)
10 human 163486 DENND1B DENN domain containing 1B NM_001195215.2 49.6% 46.5% (many diffs)
11 human 163486 DENND1B DENN domain containing 1B XM_011509248.2 49.2% 45.8% (many diffs)
12 human 163486 DENND1B DENN domain containing 1B XM_011509247.1 47.8% 44.9% (many diffs)
13 human 163486 DENND1B DENN domain containing 1B XM_011509246.2 46.6% 43.9% (many diffs)
14 human 163486 DENND1B DENN domain containing 1B XM_024453626.1 29.7% 28.4% (many diffs)
15 human 163486 DENND1B DENN domain containing 1B XM_024453627.1 18.5% 17.3% (many diffs)
16 human 163486 DENND1B DENN domain containing 1B XM_006711194.3 15.5% 14.2% (many diffs)
17 human 163486 DENND1B DENN domain containing 1B NR_125340.2 13.5% (many diffs)
18 mouse 329260 Dennd1b DENN/MADD domain containing 1B NM_001166501.1 45.2% 45.3% (many diffs)
19 mouse 329260 Dennd1b DENN/MADD domain containing 1B XM_006529716.3 44% 44.2% (many diffs)
20 mouse 329260 Dennd1b DENN/MADD domain containing 1B XM_006529717.2 42% 43% (many diffs)
21 mouse 329260 Dennd1b DENN/MADD domain containing 1B NM_181347.3 38.7% 39.8% (many diffs)
22 mouse 329260 Dennd1b DENN/MADD domain containing 1B XM_006529719.2 38.3% 37.3% (many diffs)
23 mouse 329260 Dennd1b DENN/MADD domain containing 1B XM_006529718.2 37.3% 36.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1254
ORF length:
1188
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGCAGCTCCA CGGGAGGAGA AAAGATGGCC CCAACCTGTA TTTTCGAATC
121CTGTGGTATT GTGGAAATTC CCAGAGGACT TTGGAGACCA GGAAATACTA CAGAGTGTGC
181CAAAGTTCTG TTTTCCCTTT GACGTTGAAA GGGTGTCTCA GAATCAAGTT GGACAGCACT
241TTACCTTTGT ACTGACAGAC ATTGAAAGTA AACAGAGATT TGGATTCTGC AGACTGACGT
301CAGGAGGCAC AATTTGTTTA TGCATCCTTA GTTACCTTCC CTGGTTTGAA GTGTATTACA
361AGCTTCTAAA TACTCTTGCA GATTACTTGG CTAAGGAACT GGAAAATGAT TTGAATGAAA
421CTCTCAGATC ACTGTATAAC CACCCAGTAC CAAAGGCAAA TACTCCTGTA AATTTGAGTG
481TGCATTCCTA CTTCATTGCC CCTGATGTAA CTGGACTCCC AACAATACCC GAGAGTAGAA
541ATCTTACAGA ATATTTTGTT GCCGTGGATG TGAACAACAT GCTGCAGCTG TATGCCAGTA
601TGCTGCATGA AAGGCGCATC GTGATTATCT CGAGCAAATT AAGCACTTTA ACTGCCTGTA
661TCCATGGATC AGCTGCTCTT CTATACCCAA TGTATTGGCA ACACATATAC ATCCCAGTGC
721TTCCTCCACA CCTGCTGGAC TACTGCTGTG CCCCAATGCC ATACCTGATT GGAATACACT
781CCAGCCTCAT AGAGAGAGTG AAAAACAAAT CATTGGAAGA TGTTGTTATG TTAAATGTTG
841ATACAAACAC ATTAGAATCA CCATTTAGTG ACTTGAACAA CCTACCAAGT GATGTGGTCT
901CGGCCTTGAA AAATAAACTG AAGAAGCAGT CTACAGCTAC GGGTGATGGA GTAGCTAGGG
961CCTTTCTTAG AGCACAGGCT GCTTTGTTTG GATACTACAG AGATGCACTG AGATACAAAC
1021CTGGTGAGCC CATCACTTTC TGTGAGGAGA GTTTTGTAAA GCACCGCTCA AGCGTGATGA
1081AACAGTTCCT GGAAACTGCC ATTAACCTCC AGCTTTTTAA GCAGTTTATC GATGGTCGAC
1141TGGCAAAACT AAATGCAGGA AGGGGTTTCT CTGATGTATT TGAAGAAGAG ATCACTTCAG
1201GTGGCTTTTG TGGAGGTAAA GACAAGTTAC AATATGATTA TCCATTTTCT CAATACCCAA
1261CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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