Construct: ORF ccsbBroadEn_13387
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017736.1_s300c1, BRDN0000397871
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF385C (201181)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 201181 | ZNF385C | zinc finger protein 385C | NM_001242704.1 | 40.9% | 41% | 1_750del;1245C>T |
| 2 | mouse | 278304 | Zfp385c | zinc finger protein 385C | XM_006533496.2 | 39.8% | 39.2% | (many diffs) |
| 3 | mouse | 278304 | Zfp385c | zinc finger protein 385C | NM_177790.4 | 35% | 34.4% | (many diffs) |
| 4 | mouse | 278304 | Zfp385c | zinc finger protein 385C | XM_011249062.1 | 35% | 34.4% | (many diffs) |
| 5 | mouse | 278304 | Zfp385c | zinc finger protein 385C | XM_006533494.3 | 34.9% | 34.4% | (many diffs) |
| 6 | mouse | 278304 | Zfp385c | zinc finger protein 385C | XM_017314581.1 | 29.5% | 29% | (many diffs) |
| 7 | mouse | 278304 | Zfp385c | zinc finger protein 385C | XM_006533488.3 | 29.4% | 29% | (many diffs) |
| 8 | mouse | 278304 | Zfp385c | zinc finger protein 385C | XM_006533492.3 | 29.4% | 29% | (many diffs) |
| 9 | mouse | 278304 | Zfp385c | zinc finger protein 385C | XM_006533495.2 | 29.4% | 29% | (many diffs) |
| 10 | mouse | 278304 | Zfp385c | zinc finger protein 385C | XM_017314583.1 | 28.6% | 28.2% | (many diffs) |
| 11 | mouse | 278304 | Zfp385c | zinc finger protein 385C | XM_017314582.1 | 28.6% | 28.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 588
- ORF length:
- 522
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AGGTCAGCGA GGGGCTCCCC GGAGGAGCCG GGGCCGCCCG GTGTCCAGGG 121 GAGGTGCCGG ACACAAAGCC AAGAGAGTCA CAGGGGGCCG GGGCGGCCGG CAGGGGCCCA 181 GCCCTGCCTT CCACTGTGCT CTCTGTCAGC TCCAGGTCAA TTCAGAGACC CAACTGAAGC 241 AGCACATGAG CAGCAGGAGG CACAAAGACC GCCTGGCCGG GAAGACCCCC AAGCCCTCCA 301 GCCAGCACAG CAAGCTGCAG AAGCACGCAG CGCTGGCTGT GAGTATCCTC AAGTCTAAAC 361 TGGCCTTGCA GAAGCAACTC ACCAAGACGT TGGCAGCCCG CTTCCTGCCC AGCCCGCTCC 421 CCACCGCAGC CACTGCCATC TGTGCTCTGC CAGGGCCCCT GGCCCTCCGC CCTGCCCCTA 481 CAGCAGCCAC TACCCTCTTC CCGGCTCCCA TCCTGGGCCC AGCTCTGTTT CGCACCCCAG 541 CAGGAGCTGT CCGCCCTGCT ACAGGACCTA TCGTCCTTGC CCCTTATTAC CCAACTTTCT 601 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac