Transcript: Mouse XM_017314582.1

PREDICTED: Mus musculus zinc finger protein 385C (Zfp385c), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zfp385c (278304)
Length:
2859
CDS:
53..1570

Additional Resources:

NCBI RefSeq record:
XM_017314582.1
NBCI Gene record:
Zfp385c (278304)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017314582.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000434706 GAACCTATCAGGCATATTTAC pLKO_005 1964 3UTR 100% 13.200 18.480 N Zfp385c n/a
2 TRCN0000435512 TCTAGAGCGGTCTGGACAATC pLKO_005 1909 3UTR 100% 10.800 15.120 N Zfp385c n/a
3 TRCN0000173904 GCTGTCATCAGCCACACATTT pLKO.1 470 CDS 100% 13.200 9.240 N Zfp385c n/a
4 TRCN0000433933 ACCAAGAGAGTGATAGGAAAT pLKO_005 1133 CDS 100% 10.800 7.560 N Zfp385c n/a
5 TRCN0000193412 CCTGCATCTATGATTTAACAA pLKO.1 1762 3UTR 100% 5.625 3.938 N Zfp385c n/a
6 TRCN0000194103 GCTGTTCATCTCCTGTAACAT pLKO.1 517 CDS 100% 5.625 3.938 N Zfp385c n/a
7 TRCN0000174769 GCTCTTCTTATCTTAGCCTTT pLKO.1 2507 3UTR 100% 4.050 2.835 N Zfp385c n/a
8 TRCN0000174040 CCCTACCTGTAAAGTGACAGT pLKO.1 985 CDS 100% 2.640 1.848 N Zfp385c n/a
9 TRCN0000194587 CCATGTCAATTCAGAGACCCA pLKO.1 1207 CDS 100% 0.660 0.462 N Zfp385c n/a
10 TRCN0000180871 GAAGCAACTCACCAAGACGTT pLKO.1 1351 CDS 100% 2.640 1.848 N ZNF385C n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017314582.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13387 pDONR223 100% 28.6% 28.2% None (many diffs) n/a
2 ccsbBroad304_13387 pLX_304 0% 28.6% 28.2% V5 (many diffs) n/a
3 TRCN0000481069 TGTAAGCGTCCTCGCATTTACTGC pLX_317 76% 28.6% 28.2% V5 (many diffs) n/a
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