Construct: ORF ccsbBroadEn_13485

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011113.1_s300c1, BRDN0000392987
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NALCN (259232)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 259232 NALCN sodium leak channel, non-se... NM_001350749.2 37.1% 33.2% (many diffs)
2 human 259232 NALCN sodium leak channel, non-se... NM_052867.4 37.1% 33.2% (many diffs)
3 human 259232 NALCN sodium leak channel, non-se... XM_011521067.2 36.7% 32.8% (many diffs)
4 human 259232 NALCN sodium leak channel, non-se... NM_001350748.2 36.5% 32.6% (many diffs)
5 human 259232 NALCN sodium leak channel, non-se... XM_024449336.1 36.1% 32.3% (many diffs)
6 human 259232 NALCN sodium leak channel, non-se... NM_001350750.2 35.5% 31.6% (many diffs)
7 human 259232 NALCN sodium leak channel, non-se... NM_001350751.2 35.5% 31.6% (many diffs)
8 human 259232 NALCN sodium leak channel, non-se... XM_011521069.2 35.1% 31.2% (many diffs)
9 human 259232 NALCN sodium leak channel, non-se... XM_017020536.2 27.9% 21.5% (many diffs)
10 human 259232 NALCN sodium leak channel, non-se... XM_017020537.1 22.4% 18.4% (many diffs)
11 mouse 338370 Nalcn sodium leak channel, non-se... XM_017316066.2 47.4% 46.7% (many diffs)
12 mouse 338370 Nalcn sodium leak channel, non-se... NM_177393.4 33.1% 33% (many diffs)
13 mouse 338370 Nalcn sodium leak channel, non-se... XM_017316064.2 32.8% 32.7% (many diffs)
14 mouse 338370 Nalcn sodium leak channel, non-se... XM_030247866.1 32.6% 34.6% (many diffs)
15 mouse 338370 Nalcn sodium leak channel, non-se... XM_011245094.3 32.5% 32.4% (many diffs)
16 mouse 338370 Nalcn sodium leak channel, non-se... XM_017316063.2 32.3% 34.3% (many diffs)
17 mouse 338370 Nalcn sodium leak channel, non-se... XM_017316062.2 32.2% 32.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2070
ORF length:
2004
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT CAAAAGGAAG CAGAGTTCCA GGGTGGAAGC CCAGCCAGTC ACTGACTTTG
121GTCCTGATGA GTCTCTGTCG GATAATGCTG ACATCCTCTG GATTAACAAA CCATGGGTTC
181ACTCTTTGCT GCGCATCTGT GCCATCATCA GCGTCATTTC TGTTTGTATG AATACGCCAA
241TGACCTTCGA GCACTATCCT CCACTTCAGT ATGTGACCTT CACTTTGGAT ACATTATTGA
301TGTTTCTCTA CACGGCAGAG ATGATAGCAA AAATGCACAT CCGGGGCATT GTCAAGGGGG
361ATAGTTCCTA TGTGAAAGAT CGCTGGTGTG TTTTTGATGG ATTTATGGTC TTTTGCCTTT
421GGGTTTCTTT GGTGCTACAG GTGTTTGAAA TTGCTGATAT AGTTGATCAG ATGTCACCTT
481GGGGCATGTT GCGGATTCCA CGGCCACTGA TTATGATCCG AGCATTCCGG ATTTATTTCC
541GATTTGAACT GCCAAGGACC AGAATTACAA ATATTTTAAA GCGATCGGGA GAACAAATAT
601GGAGTGTTTC CATTTTTCTA CTTTTCTTTC TACTTCTTTA TGGAATTTTA GGAGTTCAGA
661TGTTTGGAAC ATTTACTTAT CACTGTGTTG TAAATGACAC AAAGCCAGGG AATGTAACCT
721GGAATAGTTT AGCTATTCCA GACACACACT GCTCACCAGA GCTAGAAGAA GGCTACCAGT
781GCCCACCTGG ATTTAAATGC ATGGACCTTG AAGATCTGGG ACTTAGCAGG CAAGAGCTGG
841GCTACAGTGG CTTTAATGAG ATAGGAACTA GTATATTCAC CGTCTATGAG GCCGCCTCAC
901AGGAAGGCTG GGTGTTCCTC ATGTACAGAG CAATTGACAG CTTTCCCCGT TGGCGTTCCT
961ACTTCTATTT CATCACTCTC ATTTTCTTCC TCGCCTGGCT TGTGAAGAAC GTGTTTATTG
1021CTGTTATCAT TGAAACATTT GCAGAAATCA GAGTACAGTT TCAACAAATG TGGGGATCGA
1081GAAGCAGCAC TACCTCAACA GCCACCACCC AGATGTTTCA TGAAGATGCT GCTGGAGGTT
1141GGCAGCTGGT AGCCGTGGAT GTCAACAAGC CCCAGGGACG CGCCCCAGCC TGCCTCCAGA
1201AAATGATGCG GTCATCCGTT TTCCACATGT TCATCCTGAG CATGGTGACC GTGGACGTGA
1261TCGTGGCGGC TAGCAACTAC TACAAAGGAG AAAACTTCAG GAGGCAGTAC GACGAGTTCT
1321ACCTGGCGGA GGTGGCTTTT ACAGTACTTT TTGATTTGGA AGCACTTCTG AAGATATGGT
1381GTTTGGGATT TACTGGATAT ATTAGCTCAT CTCTCCACAA ATTCGAACTA CTACTCGTAA
1441TTGGAACTAC TCTTCATGTA TACCCAGATC TTTATCATTC ACAATTCACG TACTTTCAGG
1501TTCTCCGAGT AGTTCGGCTG ATTAAGATTT CACCTGCATT AGAAGACTTT GTGTACAAGA
1561TATTTGGTCC TGGAAAAAAG CTTGGGAGTT TGGTTGTATT TACTGCCAGC CTCTTGATTG
1621TTATGTCAGC AATTAGTTTG CAGATGTTCT GCTTTGTTGA AGAACTGGAC AGATTTACTA
1681CGTTTCCGAG GGCATTTATG TCCATGTTCC AGATCCTCAC CCAGGAAGGA TGGGTGGACG
1741TAATGGACCA AACTCTAAAT GCTGTGGGAC ATATGTGGGC ACCCGTGGTT GCCATCTATT
1801TCATTCTCTA TCATCTTTTT GCCACTCTGC CTCCCTCTCT TATCCGTGAC CTCTGTGGCA
1861CTCAAGACGC CTGTCCATCC TGCCTTCCTC TCCAGCCTCC AAACCATCTG CCTGGAAGCC
1921AGACTCTGGC CAGACTTACT CACCAGGCCC TCACCACACC ACCTGGAATG CGTTCCTCAC
1981AGCTCTTTTC CAAAATCAGT CTTCTCCTTG GCATCTGCGT GGCTTGGGAG AGCATCCTTG
2041GCTCTCTGTC ATTGTCTCAC AATCTTCAAT ACCCAACTTT CTTGTACAAA GTtggcatta
2101taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)