Construct: ORF ccsbBroadEn_13588

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008084.1_s300c1, BRDN0000387304
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZBTB8OS (339487)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001308136.2 91.8% 91.8% 1_36del
2 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001308137.2 86.7% 85.8% 1_36del;134G>A;136_136delGins22
3 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366278.1 81.4% 64.5% 326_378del;462_501del
4 human 339487 ZBTB8OS zinc finger and BTB domain ... XM_011541327.3 78% 71.4% (many diffs)
5 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366266.1 76.6% 74.6% 1_36del;362_363ins37;408_447del
6 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_178547.4 75.9% 60.4% 1_36del;362_414del;498_537del
7 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366265.1 75.6% 69.3% (many diffs)
8 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001308135.2 71.6% 55.6% (many diffs)
9 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366264.1 71.2% 59.4% 1_36del;363_451del;534_573del
10 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366269.1 70.3% 69.8% (many diffs)
11 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366267.1 57.4% 41.1% (many diffs)
12 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001330475.2 57.4% 41.1% (many diffs)
13 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366255.1 57.4% 41.1% (many diffs)
14 human 339487 ZBTB8OS zinc finger and BTB domain ... XM_011541328.2 57.4% 41.1% (many diffs)
15 human 339487 ZBTB8OS zinc finger and BTB domain ... XM_017001136.2 50.4% 22.9% (many diffs)
16 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001308138.2 47.3% 32% 0_1ins171;155_207del;291_330del
17 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001308139.2 47.3% 32% 0_1ins171;155_207del;291_330del
18 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001308140.2 47.3% 32% 0_1ins171;155_207del;291_330del
19 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001308141.2 47.3% 32% 0_1ins171;155_207del;291_330del
20 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366256.1 47.3% 32% 0_1ins171;155_207del;291_330del
21 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366257.1 47.3% 32% 0_1ins171;155_207del;291_330del
22 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366258.1 47.3% 32% 0_1ins171;155_207del;291_330del
23 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366259.1 47.3% 32% 0_1ins171;155_207del;291_330del
24 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366260.1 47.3% 32% 0_1ins171;155_207del;291_330del
25 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366263.1 47.3% 32% 0_1ins171;155_207del;291_330del
26 human 339487 ZBTB8OS zinc finger and BTB domain ... XM_017001137.2 47.3% 32% 0_1ins171;155_207del;291_330del
27 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366268.1 44.1% 32.2% 0_1ins171;156_244del;327_366del
28 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366270.1 41.9% 30.3% 1_36del;158_159ins205;240_279del
29 human 339487 ZBTB8OS zinc finger and BTB domain ... NM_001366271.1 40.1% 28.9% (many diffs)
30 human 339487 ZBTB8OS zinc finger and BTB domain ... NR_158773.1 23.4% (many diffs)
31 human 339487 ZBTB8OS zinc finger and BTB domain ... NR_158782.1 20.8% (many diffs)
32 human 339487 ZBTB8OS zinc finger and BTB domain ... NR_158775.1 20.6% (many diffs)
33 human 339487 ZBTB8OS zinc finger and BTB domain ... NR_158772.1 20.4% 1_403del;526_629del;916_2000del
34 human 339487 ZBTB8OS zinc finger and BTB domain ... NR_158777.1 20.2% 1_403del;500_501ins25;787_1871del
35 human 339487 ZBTB8OS zinc finger and BTB domain ... NR_158778.1 19.6% (many diffs)
36 human 339487 ZBTB8OS zinc finger and BTB domain ... NR_158779.1 18.9% 1_403del;730_985del;1068_2152del
37 human 339487 ZBTB8OS zinc finger and BTB domain ... NR_158774.1 18.3% (many diffs)
38 human 339487 ZBTB8OS zinc finger and BTB domain ... NR_158780.1 13.7% 1_403del;500_501ins147;665_1749del
39 human 339487 ZBTB8OS zinc finger and BTB domain ... NR_158781.1 13.3% (many diffs)
40 mouse 67106 Zbtb8os zinc finger and BTB domain ... XM_017320361.1 82.4% 84.4% (many diffs)
41 mouse 67106 Zbtb8os zinc finger and BTB domain ... NM_025970.3 73% 62.2% (many diffs)
42 mouse 67106 Zbtb8os zinc finger and BTB domain ... XM_006503304.3 42.7% 30.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
474
ORF length:
408
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GCAGGAAGAG GAAGATGTTA GAGATTACAA TTTGACTGAA GAACAGAAGG
121CGATCAAGGC CAAGTATCCG CCAGTCAATA GGAAGTACGA GTATTTGGAT CATACAGCAG
181ATGTCCAGTT ACACGCATGG GGAGATACTC TGGAGGAAGC ATTTGAGCAA TGTGCAATGG
241CCATGTTTGG TTACATGACA GATACTGGGA CAGTGGAGCC CCTCCAAACA GTAGAAGTAG
301AAACCCAAGG AGATGACTTA CAGTCTCTTC TGTTTCACTT TTTGGATGAA TGGCTTTATA
361AGTTCAGTGC TGATGAATTC TTCATACCCC GGGTGGGGAG AAGAATTTTC ATTGTCCAAG
421CACCCTCAGG GAACAGAAGT CAAAGCAATA ACATATTCAG CAATGCAGGT CTATACCCAA
481CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)