Construct: ORF ccsbBroadEn_13645
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004312.1_s300c1, BRDN0000456245
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- POTEC (388468)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 102724631 | POTEB3 | POTE ankyrin domain family ... | XM_011543795.2 | 98.2% | 97.1% | (many diffs) |
| 2 | human | 102724631 | POTEB3 | POTE ankyrin domain family ... | XM_006720358.2 | 97% | 94.7% | (many diffs) |
| 3 | human | 102724631 | POTEB3 | POTE ankyrin domain family ... | XM_011543797.2 | 96.9% | 95.8% | (many diffs) |
| 4 | human | 102723502 | LOC102723502 | POTE ankyrin domain family ... | XM_006724901.3 | 96.7% | 94.5% | (many diffs) |
| 5 | human | 100288966 | LOC100288966 | POTE ankyrin domain family ... | XM_006709930.3 | 96.7% | 92.9% | (many diffs) |
| 6 | human | 317754 | POTED | POTE ankyrin domain family ... | XM_006723997.3 | 96.7% | 92.9% | (many diffs) |
| 7 | human | 102724631 | POTEB3 | POTE ankyrin domain family ... | XM_011543796.2 | 96.7% | 95.5% | (many diffs) |
| 8 | human | 102723502 | LOC102723502 | POTE ankyrin domain family ... | XM_011546200.2 | 96.6% | 95.5% | (many diffs) |
| 9 | human | 100288966 | LOC100288966 | POTE ankyrin domain family ... | XM_011545656.2 | 96.6% | 93.9% | (many diffs) |
| 10 | human | 102723502 | LOC102723502 | POTE ankyrin domain family ... | XM_011546199.2 | 96.5% | 95.2% | (many diffs) |
| 11 | human | 317754 | POTED | POTE ankyrin domain family ... | XM_011529550.2 | 96.5% | 93.7% | (many diffs) |
| 12 | human | 100288966 | LOC100288966 | POTE ankyrin domain family ... | XM_011545655.2 | 96.5% | 93.7% | (many diffs) |
| 13 | human | 100287399 | POTEB2 | POTE ankyrin domain family ... | XM_006720354.3 | 87.4% | 85.1% | (many diffs) |
| 14 | human | 100996331 | POTEB | POTE ankyrin domain family ... | XM_006720355.3 | 87.4% | 85.1% | (many diffs) |
| 15 | human | 100287399 | POTEB2 | POTE ankyrin domain family ... | XM_017021853.1 | 87.2% | 86% | (many diffs) |
| 16 | human | 100996331 | POTEB | POTE ankyrin domain family ... | XM_017021858.1 | 87.2% | 86% | (many diffs) |
| 17 | human | 100287399 | POTEB2 | POTE ankyrin domain family ... | XM_011543793.2 | 87% | 85.8% | (many diffs) |
| 18 | human | 100996331 | POTEB | POTE ankyrin domain family ... | XM_011543794.2 | 87% | 85.8% | (many diffs) |
| 19 | human | 340441 | POTEA | POTE ankyrin domain family ... | XM_011544516.1 | 70.7% | 62.5% | (many diffs) |
| 20 | human | 388468 | POTEC | POTE ankyrin domain family ... | NM_001137671.1 | 69.8% | 69% | (many diffs) |
| 21 | human | 404785 | POTEG | POTE ankyrin domain family ... | NM_001005356.3 | 69.4% | 66.1% | (many diffs) |
| 22 | human | 641455 | POTEM | POTE ankyrin domain family ... | NM_001145442.1 | 69.2% | 65.9% | (many diffs) |
| 23 | human | 23784 | POTEH | POTE ankyrin domain family ... | NM_001136213.1 | 64.8% | 61.8% | (many diffs) |
| 24 | human | 102724631 | POTEB3 | POTE ankyrin domain family ... | NM_207355.3 | 64.1% | 62.9% | (many diffs) |
| 25 | human | 102723502 | LOC102723502 | POTE ankyrin domain family ... | XM_006724900.4 | 63.9% | 62.8% | (many diffs) |
| 26 | human | 100288966 | LOC100288966 | POTE ankyrin domain family ... | NM_001257362.2 | 63.6% | 61.4% | (many diffs) |
| 27 | human | 317754 | POTED | POTE ankyrin domain family ... | NM_174981.3 | 63.6% | 61.4% | (many diffs) |
| 28 | human | 100287399 | POTEB2 | POTE ankyrin domain family ... | NM_001277303.1 | 57.7% | 56.6% | (many diffs) |
| 29 | human | 100996331 | POTEB | POTE ankyrin domain family ... | NM_001277304.1 | 57.7% | 56.6% | (many diffs) |
| 30 | human | 102724631 | POTEB3 | POTE ankyrin domain family ... | NR_110752.1 | 55.8% | (many diffs) | |
| 31 | human | 404785 | POTEG | POTE ankyrin domain family ... | NR_027480.1 | 53.6% | (many diffs) | |
| 32 | human | 100287399 | POTEB2 | POTE ankyrin domain family ... | NR_102390.1 | 50.4% | (many diffs) | |
| 33 | human | 100996331 | POTEB | POTE ankyrin domain family ... | NR_102391.1 | 50.4% | (many diffs) | |
| 34 | human | 340441 | POTEA | POTE ankyrin domain family ... | NM_001005365.2 | 47.4% | 42.3% | (many diffs) |
| 35 | human | 340441 | POTEA | POTE ankyrin domain family ... | XM_024447146.1 | 42.8% | 38.2% | (many diffs) |
| 36 | human | 445582 | POTEE | POTE ankyrin domain family ... | XM_011511216.2 | 36.7% | 35.6% | (many diffs) |
| 37 | human | 445582 | POTEE | POTE ankyrin domain family ... | XM_017004159.2 | 36.4% | 35.2% | (many diffs) |
| 38 | human | 653269 | POTEI | POTE ankyrin domain family ... | NM_001277406.2 | 32.9% | 31.9% | (many diffs) |
| 39 | human | 653269 | POTEI | POTE ankyrin domain family ... | XM_024453046.1 | 32.9% | 31.9% | (many diffs) |
| 40 | human | 445582 | POTEE | POTE ankyrin domain family ... | NM_001083538.2 | 32.7% | 31.8% | (many diffs) |
| 41 | human | 445582 | POTEE | POTE ankyrin domain family ... | XM_017004161.2 | 32.7% | 31.8% | (many diffs) |
| 42 | human | 728378 | POTEF | POTE ankyrin domain family ... | NM_001099771.2 | 32.7% | 31.6% | (many diffs) |
| 43 | human | 653269 | POTEI | POTE ankyrin domain family ... | XM_011511670.2 | 32.6% | 31.6% | (many diffs) |
| 44 | human | 653269 | POTEI | POTE ankyrin domain family ... | XM_017004732.2 | 32.6% | 31.6% | (many diffs) |
| 45 | human | 728378 | POTEF | POTE ankyrin domain family ... | XM_017004833.1 | 32.4% | 31.3% | (many diffs) |
| 46 | human | 653269 | POTEI | POTE ankyrin domain family ... | NM_001371926.1 | 32.3% | 31.2% | (many diffs) |
| 47 | human | 440915 | POTEKP | POTE ankyrin domain family ... | NR_033885.3 | 32% | (many diffs) | |
| 48 | human | 653781 | POTEJ | POTE ankyrin domain family ... | NM_001277083.2 | 29.9% | 29.3% | (many diffs) |
| 49 | human | 653781 | POTEJ | POTE ankyrin domain family ... | XM_011511683.2 | 29.7% | 29% | (many diffs) |
| 50 | human | 653781 | POTEJ | POTE ankyrin domain family ... | XM_017004741.2 | 29.7% | 29% | (many diffs) |
| 51 | human | 388468 | POTEC | POTE ankyrin domain family ... | NR_134878.1 | 17.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1212
- ORF length:
- 1143
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTGGCTGAG GTTTGTTCAA TGCCCGCTGC CTCTGCTGTG AAGAAGCCAT 121 TCGATCTCAG GAGCAAGATG GGCAAGTGGT TTCACCACCG CTTCCCCTGC TGCAAGGGGA 181 GCGGCAAGAG CAACATGGGC ACTTCTGGAG ACCACGACGA CTCCTTTATG AAGATGCTCA 241 GGAGCAAGAT GGGCAAGTGT TGCCACCACT GCTTCCCCTG CTGCAGGGGG AGCGGCACGA 301 GCAACGTGGG CACTTCTGGA GACGATGACA ACTCCTTTAT GAAGACGCTC AGGAGCAAGA 361 TGGGCAAGTG GTGCTGTCAC TGCTTCCCCT GCTGCAGGGG GAGCGGCAAG AGCAACGTGG 421 GCGCTTGGGG AGACTACGAC GACAGCGCCT TCATGGAGCC GAGGTACCAC GTCCGTCGAG 481 AAGATCTGGA CAAGCTCCAC AGAGCTGCCT GGTGGGGTAA GGTCCCCAGA AAGGATCTCA 541 TCGTCATGCT CAGGGACACG GACATGAACA AGAGGGACAA GCAAAAGAGG ACTGCTCTAC 601 ATTTGGCCTC TGCCAATGGA AATTCAGAAG TAGTACAACT CCTGCTGGAC AGACGATGTC 661 AACTTAATGT CCTTGACAAC AAAAAAAGGA CAGCTCTGAT AAAGGCCGTA CAATGCCAGG 721 AAGATGAATG TGTGTTAATG TTGCTGGAAC ATGGCGCTGA TCAAAATATT CCAGATGAGT 781 ATGGAAATAC CACTCTACAC TATGCTGTCC ACAATGAAGA TAAATTAATG GCCAAAGCAC 841 TGCTCTTATA TGGTGCTGAT ATTGAATCAA AAAACAAGTG TGGCCTCACA CCACTTTTGC 901 TTGGCGTACA TGAACAAAAA CAGCAAGTGG TGAAATTTTT AATCAAGAAA AAAGCTAATT 961 TAAATGCACT TGATAGATAT GGAAGAACTG CCCTCATACT TGCTGTATGT TGTGGATCAG 1021 CAAGTATAGT CAATCTTCTC CTTGAGCAAA ATGTTGATGT ATCTTCTCAA GATCTATGTG 1081 GACAGACGGC CAGAGAGTAT GCTGTTTCTA GTCATCATCA TGTAATTTGT GAATTACTTT 1141 CTGACTATAA AGAAAAACAG ATGCTAAAAA TCTCTTCTGA AAACAGCAAT CCAGGTAAAG 1201 AAGCAGAAGA ATTGCCAACT TTCTTGTACA AAGTTGGcat tataagaaag cattgcttat 1261 caatttgttg caacgaac