Construct: ORF ccsbBroadEn_13716
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000077.1_s300c1, BRDN0000387034
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DPY19L2P1 (554236)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448957.1 | 55.8% | 47.5% | (many diffs) |
| 2 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448955.1 | 52.7% | 44.9% | (many diffs) |
| 3 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448954.1 | 51.2% | 43.5% | (many diffs) |
| 4 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448953.1 | 43.9% | 37.3% | (many diffs) |
| 5 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448952.1 | 42.4% | 36.1% | (many diffs) |
| 6 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448951.1 | 42.3% | 35.9% | (many diffs) |
| 7 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448950.1 | 41% | 34.9% | (many diffs) |
| 8 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448949.1 | 40.2% | 34.2% | (many diffs) |
| 9 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448948.1 | 38.1% | 32.4% | (many diffs) |
| 10 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_017019192.2 | 32.2% | 27.4% | (many diffs) |
| 11 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448945.1 | 31.8% | 27% | (many diffs) |
| 12 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448944.1 | 30.8% | 26.2% | (many diffs) |
| 13 | human | 283417 | DPY19L2 | dpy-19 like 2 | NM_173812.5 | 30% | 25.5% | (many diffs) |
| 14 | human | 554236 | DPY19L2P1 | DPY19L2 pseudogene 1 | NR_002833.2 | 25.6% | 1_121del;848_2827del | |
| 15 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957316.1 | 18.4% | (many diffs) | |
| 16 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448956.1 | 18.2% | 15% | (many diffs) |
| 17 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_017019193.2 | 17.8% | 14.4% | (many diffs) |
| 18 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957315.1 | 17.7% | (many diffs) | |
| 19 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957314.1 | 16.5% | (many diffs) | |
| 20 | human | 349152 | DPY19L2P2 | DPY19L2 pseudogene 2 | NR_027768.1 | 16% | (many diffs) | |
| 21 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_006719352.2 | 13.3% | 11% | (many diffs) |
| 22 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448946.1 | 13.3% | 11% | (many diffs) |
| 23 | human | 283417 | DPY19L2 | dpy-19 like 2 | XM_024448947.1 | 13.3% | 11% | (many diffs) |
| 24 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957318.1 | 6.4% | (many diffs) | |
| 25 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957319.1 | 6.1% | (many diffs) | |
| 26 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_001748666.2 | 6% | (many diffs) | |
| 27 | human | 283417 | DPY19L2 | dpy-19 like 2 | XR_002957317.1 | 6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 792
- ORF length:
- 726
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GAAACAAGGA GTAAACCCAA AGCCGCTGCA ATCTTCCCGC CCCAGCCCGT 121 CTAAGCGGCC GTACGGGGCC TCCCCCGCCC GGGAGCTGGA GGTGGAAAAG TCGGCCCTAG 181 GCGGCGGGAA ACTGCCAGGG GGCGCCAGGA GGTCCTCCCC GGGGAGGATC CCAAATCTGA 241 AAAAGCGAAA AGGCTTGGAG CTAAAGGTGG TGGCCAAGAC CCTTCTCGAC CCCTTCCAGT 301 TCGTCCGTAA TTCCCTGGCG CAGCTCCGGG AAGAGGTGCA CGAACTGCAG GCGCGGTGGT 361 TCCCCAGCAG AACCACTCTC AGCATCGCCA TCTTTGTGGC AATTCTACAT TGGTTACATT 421 TAGTAACACT TTTTGAAAAT GATCGTCATT TCTCTCACCT CTCATCTTTG GAATGGGAGA 481 TGACTTTTCG CACTAAAATG GGACTTTATT ATTCCTACTT CAAGACCATC ATTGAAGCAC 541 CTTCATTTTT GGAAGGACTG TGGATGATTA TGAATGACAG GCTTACTGAA TATCCTCTTG 601 TAATTAATAC AGTAAAACGC TTCCATCTTT ATCCAGAGGT AATCATAGCT GCCTGGTATC 661 GCACATTCAT AGGAATAATG AATTTATTTG GACTAGAAAC TAAGACCTGC TGGAATGTCA 721 CCAGAATAGA ACCTCTTAAT GAGTTCAAAG CTGTGAAGGA TTGGGAGATC CTGCTTGCTT 781 TTATGTTGGT GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 841 caatttgttg caacgaac