Construct: ORF ccsbBroadEn_13729

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004843.1_s300c1, BRDN0000387266
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RPL23AP64 (649946)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 649946 RPL23AP64 ribosomal protein L23a pseu... NR_003040.2 36.3% (many diffs)
2 human 6147 RPL23A ribosomal protein L23a NM_000984.6 35% 32.3% (many diffs)
3 human 56969 RPL23AP32 ribosomal protein L23a pseu... NR_002229.2 31.1% (many diffs)
4 human 285830 HLA-F-AS1 HLA-F antisense RNA 1 NR_026973.1 30.7% (many diffs)
5 human 118433 RPL23AP7 ribosomal protein L23a pseu... NR_000029.3 17.5% (many diffs)
6 human 118433 RPL23AP7 ribosomal protein L23a pseu... NR_024529.1 15.5% (many diffs)
7 human 284942 RPL23AP82 ribosomal protein L23a pseu... NR_026982.1 14.9% (many diffs)
8 human 118433 RPL23AP7 ribosomal protein L23a pseu... NR_024528.1 14.5% (many diffs)
9 human 284942 RPL23AP82 ribosomal protein L23a pseu... NR_026981.1 14.2% (many diffs)
10 human 285830 HLA-F-AS1 HLA-F antisense RNA 1 NR_026972.1 11.2% (many diffs)
11 human 388574 RPL23AP87 ribosomal protein L23a pseu... NR_029406.1 9.5% (many diffs)
12 human 644128 RPL23AP53 ribosomal protein L23a pseu... NR_003572.2 3.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
309
ORF length:
243
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA GAAGACAGAA GACAACAACG CACTTGTGTT CACTGTGAAT GTTAAAGCCA
121ACAAGCACCA GAAGAAGCTC TATGACACTG ATGTGGCCAA GGTCAACACC CTGATTCGGC
181CTGATGGAGA GAAGGAACAT GTTCGACTGG CTCCTGATTA CAATGCTTTG GATGTTGCCA
241ACAAAATAGG GATCATCTCA ACTGAGTCCA GTTGGCTAAT TCTAAATATA TGTATATCTT
301TTCACCATTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
361tttgttgcaa cgaac

Download FASTA (ORF) (Full)