Construct: ORF ccsbBroadEn_13737

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016882.1_s300c1, BRDN0000394994
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SDHAP2 (727956)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 220729 LOC220729 succinate dehydrogenase com... NR_003266.2 27.3% (many diffs)
2 human 6389 SDHA succinate dehydrogenase com... NM_001330758.1 23.7% 22.9% (many diffs)
3 human 6389 SDHA succinate dehydrogenase com... XM_011514073.2 23% 22.3% (many diffs)
4 human 6389 SDHA succinate dehydrogenase com... NM_004168.4 20.8% 20.1% (many diffs)
5 human 6389 SDHA succinate dehydrogenase com... NM_001294332.1 20.6% 18.1% (many diffs)
6 human 6389 SDHA succinate dehydrogenase com... XM_011514072.2 20.3% 19.7% (many diffs)
7 human 727956 SDHAP2 succinate dehydrogenase com... NR_003265.3 19% (many diffs)
8 human 6389 SDHA succinate dehydrogenase com... XM_017009685.2 17.6% 17% (many diffs)
9 human 6389 SDHA succinate dehydrogenase com... XM_024446143.1 17.3% 15.1% (many diffs)
10 human 255812 SDHAP1 succinate dehydrogenase com... NR_003264.2 16.8% (many diffs)
11 human 6389 SDHA succinate dehydrogenase com... XR_002956167.1 7.9% (many diffs)
12 mouse 66945 Sdha succinate dehydrogenase com... NM_023281.1 19.4% 19.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
513
ORF length:
444
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAGGAGGAC AACTGGAGGT GGCATTTCTA TGACACCGTG AAGGGCTCCG
121ACTGGCTGGG GGACCAGGAT GCCATCCACT ACGTGACGGA GCAGGCCCCC ACTGCCATGG
181TCGAGGTAGA AAATTATGGC ATGCCGTTTA GCAGAACTGA AGATGGGAAG ATTTATCAGC
241GTGCATTTGG CGGACACAGC CTCAAGTTTG GAAAGGGCAG GCAGGCCCAT CGGTGCTGCT
301GTGTGGCTGA TCGGACCGGC CACTCAATAT TGCACACCTT ATATGGGAGG TCTCTGCGAT
361ATGATACCAG CTGTTTTGTG GAGTATTTTG CCTTGGATCT CCTGATGGAG AATGGGGAGT
421GCCGTGGTGT CTTCGCACTG TGCATACAGG ACGGGTCCAT CCATCGCATA AGAGCAAAGA
481ATACTATTGT TGCCACAGGG TACTTGGGAG GCTTGCCAAC TTTCTTGTAC AAAGTtggca
541ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)