Construct: ORF ccsbBroadEn_13817
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005259.1_s300c1, BRDN0000395201
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATP2B3 (492)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 492 | ATP2B3 | ATPase plasma membrane Ca2+... | NM_021949.3 | 74.4% | 74.4% | (many diffs) |
| 2 | human | 492 | ATP2B3 | ATPase plasma membrane Ca2+... | XM_005274692.3 | 74.4% | 74.4% | (many diffs) |
| 3 | human | 492 | ATP2B3 | ATPase plasma membrane Ca2+... | XM_024452386.1 | 73.2% | 73.2% | (many diffs) |
| 4 | human | 492 | ATP2B3 | ATPase plasma membrane Ca2+... | NM_001001344.2 | 71.5% | 71.5% | (many diffs) |
| 5 | human | 492 | ATP2B3 | ATPase plasma membrane Ca2+... | XM_005274690.3 | 71.5% | 71.5% | (many diffs) |
| 6 | human | 492 | ATP2B3 | ATPase plasma membrane Ca2+... | XM_005274691.3 | 70.4% | 70.4% | (many diffs) |
| 7 | human | 492 | ATP2B3 | ATPase plasma membrane Ca2+... | XM_005274689.3 | 69.8% | 69.8% | (many diffs) |
| 8 | human | 492 | ATP2B3 | ATPase plasma membrane Ca2+... | XM_011531174.2 | 69.1% | 69.1% | (many diffs) |
| 9 | human | 492 | ATP2B3 | ATPase plasma membrane Ca2+... | XM_017029553.1 | 68.5% | 68.5% | (many diffs) |
| 10 | human | 492 | ATP2B3 | ATPase plasma membrane Ca2+... | XM_011531177.2 | 68% | 68% | (many diffs) |
| 11 | human | 492 | ATP2B3 | ATPase plasma membrane Ca2+... | XR_001755693.2 | 21.8% | (many diffs) | |
| 12 | mouse | 320707 | Atp2b3 | ATPase, Ca++ transporting, ... | XM_006528086.2 | 68.9% | 76.2% | (many diffs) |
| 13 | mouse | 320707 | Atp2b3 | ATPase, Ca++ transporting, ... | NM_001310537.1 | 67.8% | 75% | (many diffs) |
| 14 | mouse | 320707 | Atp2b3 | ATPase, Ca++ transporting, ... | XM_006528084.3 | 66.2% | 73.2% | (many diffs) |
| 15 | mouse | 320707 | Atp2b3 | ATPase, Ca++ transporting, ... | XM_011247614.2 | 65.1% | 72.2% | (many diffs) |
| 16 | mouse | 320707 | Atp2b3 | ATPase, Ca++ transporting, ... | NM_177236.4 | 63.6% | 70.4% | (many diffs) |
| 17 | mouse | 320707 | Atp2b3 | ATPase, Ca++ transporting, ... | XM_011247613.1 | 62.6% | 69.4% | (many diffs) |
| 18 | mouse | 320707 | Atp2b3 | ATPase, Ca++ transporting, ... | XM_006528081.2 | 62.1% | 68.7% | (many diffs) |
| 19 | mouse | 320707 | Atp2b3 | ATPase, Ca++ transporting, ... | XM_011247609.2 | 62.1% | 68.7% | (many diffs) |
| 20 | mouse | 320707 | Atp2b3 | ATPase, Ca++ transporting, ... | XM_011247610.1 | 62.1% | 68.7% | (many diffs) |
| 21 | mouse | 320707 | Atp2b3 | ATPase, Ca++ transporting, ... | XM_011247611.2 | 62.1% | 68.7% | (many diffs) |
| 22 | mouse | 320707 | Atp2b3 | ATPase, Ca++ transporting, ... | XM_011247612.1 | 61.1% | 67.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2691
- ORF length:
- 2622
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGCGACATG GCCAATAGTT CCATCGAGTT CCACCCCAAG CCCCAGCAGC 121 AGCGGGATGT CCCCCAGGCT GGAGGCTTTG GGTGCACGCT GGCGGAGCTG CGCACCCTCA 181 TGGAGCTGCG AGGGGCCGAG GCGCTGCAGA AGATCGAGGA GGCCTACGGG GATGTCAGCG 241 GGCTCTGCCG GAGGCTGAAG ACCTCACCCA CAGAGGGCCT GGCGGACAAC ACCAATGACC 301 TGGAGAAGCG CAGGCAGATC TACGGGCAGA ACTTCATCCC CCCAAAGCAA CCCAAGACCT 361 TCCTGCAGCT GGTGTGGGAG GCCCTGCAGG ACGTGACCCT CATCATCCTG GAGGTGGCTG 421 CCATCGTCTC TCTGGGCCTC TCGTTCTATG CGCCGCCAGG AGAGGAGAGT GAAGCCTGTG 481 GGAATGTGTC GGGAGGCGCA GAAGATGAGG GCGAGGCCGA AGCTGGCTGG ATCGAGGGGG 541 CTGCCATCCT GCTGTCCGTC ATCTGTGTGG TGCTGGTCAC GGCCTTCAAT GACTGGAGCA 601 AGGAGAAGCA GTTCCGAGGC CTGCAGAGCC GAATTGAGCA GGAGCAGAAG TTCACGGTCA 661 TCCGGAACGG GCAGCTCCTC CAGGTCCCCG TGGCTGCGCT GGTGGTGGGG GACATTGCCC 721 AGGTCAAGTA CGGCGACCTG CTGCCAGCCG ACGGCGTGCT CATCCAGGCC AATGACCTCA 781 AGATCGACGA GAGCTCCCTG ACGGGCGAGT CTGACCACGT GCGCAAGTCA GCTGACAAAG 841 ATCCCATGCT GCTCTCAGGC ACTCATGTCA TGGAAGGTTC TGGAAGAATG GTGGTGACCG 901 CCGTTGGCGT GAATTCCCAG ACAGGCATCA TCTTCACGCT GCTTGGAGCT GGCGGAGAGG 961 AGGAAGAGAA GAAAGATAAG AAAGGCAAGC AGCAGGATGG GGCCATGGAG AGTAGCCAGA 1021 CCAAAGCTAA GAAGCAGGAT GGTGCAGTGG CCATGGAGAT GCAGCCCCTG AAGAGCGCGG 1081 AGGGTGGGGA GATGGAGGAG CGGGAGAAGA AGAAAGCCAA CGCACCCAAA AAGGAGAAGT 1141 CTGTCCTTCA GGGGAAGCTC ACAAAGCTAG CCGTGCAGAT CGGGAAAGCA GGGCTGGTGA 1201 TGTCTGCCAT CACCGTCATC ATCCTGGTCC TCTACTTTGT GATTGAGACG TTTGTCGTGG 1261 AAGGCCGGAC ATGGCTGGCA GAGTGCACGC CGGTCTATGT ACAATACTTC GTGAAGTTCT 1321 TCATCATTGG TGTCACTGTG CTGGTCGTGG CTGTCCCAGA GGGCCTGCCT CTTGCTGTCA 1381 CCATCTCCTT AGCTTACTCT GTCAAGAAAA TGATGAAAGA CAACAACCTG GTGCGCCACC 1441 TGGATGCCTG CGAGACCATG GGCAACGCCA CAGCCATCTG CTCCGACAAG ACGGGCACGC 1501 TCACCACCAA CCGTATGACC GTGGTCCAGT CCTACCTAGG GGACACCCAC TACAAAGAGA 1561 TTCCGGCCCC CAGCGCCCTG ACCCCTAAGA TCCTCGACCT CCTGGTCCAT GCCATCTCCA 1621 TCAACAGTGC CTATACCACC AAAATACTAC CTCCTGAGAA GGAAGGCGCC CTCCCACGCC 1681 AGGTGGGCAA TAAGACGGAG TGCGCCCTGC TGGGCTTCGT CTTGGACCTG AAGCGGGACT 1741 TCCAGCCCGT GCGCGAGCAG ATCCCGGAAG ACAAGCTTTA CAAAGTGTAC ACCTTCAACT 1801 CGGTCCGCAA GTCCATGAGC ACAGTCATCC GCATGCCCGA CGGTGGCTTC CGCCTCTTCA 1861 GCAAGGGGGC CTCAGAGATC CTCTTGAAAA AGTGCACCAA CATCTTGAAC AGCAATGGCG 1921 AACTCCGGGG CTTTCGGCCT CGGGACCGGG ACGACATGGT GAGGAAGATC ATCGAGCCGA 1981 TGGCTTGCGA TGGCCTCCGC ACCATCTGCA TCGCCTACCG GGACTTCTCT GCAGGCCAGG 2041 AGCCCGACTG GGACAACGAG AATGAGGTCG TGGGTGACCT CACCTGCATA GCTGTCGTGG 2101 GCATTGAGGA CCCTGTGCGG CCCGAGGTCC CTGAAGCTAT CCGAAAATGC CAGCGTGCTG 2161 GCATCACAGT CCGCATGGTG ACTGGGGACA ACATCAACAC GGCCCGGGCC ATCGCAGCCA 2221 AATGCGGCAT CATCCAGCCC GGGGAGGACT TCCTGTGCCT AGAAGGGAAG GAGTTCAACC 2281 GGCGGATCCG CAATGAGAAA GGCGAGATAG AACAGGAGCG GCTGGACAAG GTGTGGCCCA 2341 AGCTGAGGGT GCTGGCCCGG TCGTCTCCCA CCGACAAGCA CACACTGGTC AAAGGGATTA 2401 TCGACAGCAC CACTGGTGAG CAGCGGCAGG TGGTGGCTGT GACAGGGGAT GGCACCAACG 2461 ATGGGCCGGC CCTCAAGAAG GCGGACGTGG GCTTCGCCAT GGGCATCGCA GGGACCGACA 2521 TGGCCAAGGA GGCCTCCGAC ATCATCCTGA CCGATGACAA CTTCACCAGC ATCGTCAAGG 2581 CAGTCATGTG GGGCCGTAAC GTCTATGACA GCATCTCCAA GTTCCTGCAG TTTCAACTGA 2641 CGGTCAATGT GGTGGCTGTC ATCGTGGCCT TCACAGGTGC CTGCATTACT TTGCCAACTT 2701 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac