Construct: ORF ccsbBroadEn_13854

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000721.1_s300c1, BRDN0000390422
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
DMTN (2039)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2039 DMTN dematin actin binding protein NM_001114137.3 99.8% 1% 3delG;204C>T
2 human 2039 DMTN dematin actin binding protein NM_001114138.3 99.8% 1% 3delG;204C>T
3 human 2039 DMTN dematin actin binding protein NM_001302816.3 99.8% 1% 3delG;204C>T
4 human 2039 DMTN dematin actin binding protein NM_001323383.2 99.8% 1% 3delG;204C>T
5 human 2039 DMTN dematin actin binding protein NM_001323384.2 99.8% 1% 3delG;204C>T
6 human 2039 DMTN dematin actin binding protein NM_001323385.2 99.8% 1% 3delG;204C>T
7 human 2039 DMTN dematin actin binding protein XM_017013189.1 99.8% 1% 3delG;204C>T
8 human 2039 DMTN dematin actin binding protein XM_017013190.1 95.9% 1% 3delG;204C>T;246_247ins45
9 human 2039 DMTN dematin actin binding protein XM_017013191.1 95.9% 1% 3delG;204C>T;246_247ins45
10 human 2039 DMTN dematin actin binding protein XM_017013192.1 95.9% 1% 3delG;204C>T;246_247ins45
11 human 2039 DMTN dematin actin binding protein NM_001114135.5 94.4% .9% 3delG;204C>T;956_1021del
12 human 2039 DMTN dematin actin binding protein NM_001114136.3 94.4% .9% 3delG;204C>T;956_1021del
13 human 2039 DMTN dematin actin binding protein NM_001323378.2 94.4% .9% 3delG;204C>T;956_1021del
14 human 2039 DMTN dematin actin binding protein NM_001323379.2 94.4% .9% 3delG;204C>T;956_1021del
15 human 2039 DMTN dematin actin binding protein NM_001323380.2 94.4% .9% 3delG;204C>T;956_1021del
16 human 2039 DMTN dematin actin binding protein NM_001323381.2 94.4% .9% 3delG;204C>T;956_1021del
17 human 2039 DMTN dematin actin binding protein NM_001323382.2 94.4% .9% 3delG;204C>T;956_1021del
18 human 2039 DMTN dematin actin binding protein NM_001978.5 94.4% .9% 3delG;204C>T;956_1021del
19 human 2039 DMTN dematin actin binding protein NM_001114139.4 93.2% .8% 3delG;17_18ins75;129C>T
20 human 2039 DMTN dematin actin binding protein NM_001323387.2 93.2% .8% 3delG;17_18ins75;129C>T
21 human 2039 DMTN dematin actin binding protein XM_017013195.1 93.2% .8% 3delG;17_18ins75;129C>T
22 human 2039 DMTN dematin actin binding protein XM_017013196.2 93.2% .8% 3delG;17_18ins75;129C>T
23 human 2039 DMTN dematin actin binding protein XM_017013197.1 93.2% .8% 3delG;17_18ins75;129C>T
24 human 2039 DMTN dematin actin binding protein XM_017013198.1 93.2% .8% 3delG;17_18ins75;129C>T
25 human 2039 DMTN dematin actin binding protein NM_001323389.2 90.6% 1% (many diffs)
26 human 2039 DMTN dematin actin binding protein NM_001323390.2 90.6% 1% (many diffs)
27 human 2039 DMTN dematin actin binding protein XM_011544435.1 90.6% 1% (many diffs)
28 human 2039 DMTN dematin actin binding protein NM_001323398.2 89.3% .8% (many diffs)
29 human 2039 DMTN dematin actin binding protein NM_001323399.2 89.3% .8% (many diffs)
30 human 2039 DMTN dematin actin binding protein NM_001323400.2 89.3% .8% (many diffs)
31 human 2039 DMTN dematin actin binding protein NM_001323401.2 89.3% .8% (many diffs)
32 human 2039 DMTN dematin actin binding protein NM_001323391.2 88.2% .7% (many diffs)
33 human 2039 DMTN dematin actin binding protein NM_001323392.2 88.2% .7% (many diffs)
34 human 2039 DMTN dematin actin binding protein NM_001323393.2 88.2% .7% (many diffs)
35 human 2039 DMTN dematin actin binding protein NM_001323394.2 88.2% .7% (many diffs)
36 human 2039 DMTN dematin actin binding protein NM_001323395.2 88.2% .7% (many diffs)
37 human 2039 DMTN dematin actin binding protein NM_001323396.2 88.2% .7% (many diffs)
38 human 2039 DMTN dematin actin binding protein NM_001323397.2 88.2% .7% (many diffs)
39 human 2039 DMTN dematin actin binding protein NM_001302817.3 84.5% .8% (many diffs)
40 human 2039 DMTN dematin actin binding protein NM_001323388.2 84.5% .8% (many diffs)
41 human 2039 DMTN dematin actin binding protein XM_017013193.1 84.5% .8% (many diffs)
42 human 2039 DMTN dematin actin binding protein XM_017013194.1 84.5% .8% (many diffs)
43 human 2039 DMTN dematin actin binding protein XR_002956606.1 44.5% (many diffs)
44 human 2039 DMTN dematin actin binding protein XR_002956616.1 44.1% (many diffs)
45 human 2039 DMTN dematin actin binding protein XR_002956614.1 43.9% (many diffs)
46 human 2039 DMTN dematin actin binding protein XR_002956615.1 43.3% (many diffs)
47 human 2039 DMTN dematin actin binding protein XR_002956607.1 43.3% (many diffs)
48 human 2039 DMTN dematin actin binding protein XR_002956608.1 43.2% (many diffs)
49 human 2039 DMTN dematin actin binding protein XR_002956611.1 42.5% (many diffs)
50 human 2039 DMTN dematin actin binding protein XR_002956612.1 42.3% (many diffs)
51 human 2039 DMTN dematin actin binding protein XR_002956605.1 42.1% (many diffs)
52 human 2039 DMTN dematin actin binding protein XR_002956619.1 42% (many diffs)
53 human 2039 DMTN dematin actin binding protein XR_002956620.1 41.5% (many diffs)
54 human 2039 DMTN dematin actin binding protein XR_002956610.1 40.7% (many diffs)
55 human 2039 DMTN dematin actin binding protein XR_002956617.1 40.6% (many diffs)
56 human 2039 DMTN dematin actin binding protein XR_002956604.1 38.8% (many diffs)
57 human 2039 DMTN dematin actin binding protein XR_002956613.1 38.3% (many diffs)
58 human 2039 DMTN dematin actin binding protein XR_002956609.1 37.3% (many diffs)
59 mouse 13829 Dmtn dematin actin binding protein NM_001252663.1 89.4% 1% (many diffs)
60 mouse 13829 Dmtn dematin actin binding protein NM_013514.4 89.4% 1% (many diffs)
61 mouse 13829 Dmtn dematin actin binding protein XM_017315839.1 89.4% 1% (many diffs)
62 mouse 13829 Dmtn dematin actin binding protein XM_011244950.2 85.2% .9% (many diffs)
63 mouse 13829 Dmtn dematin actin binding protein NM_001252662.1 84.6% .9% (many diffs)
64 mouse 13829 Dmtn dematin actin binding protein XM_006518530.3 84.6% .9% (many diffs)
65 mouse 13829 Dmtn dematin actin binding protein XM_006518531.2 84.6% .9% (many diffs)
66 mouse 13829 Dmtn dematin actin binding protein XM_006518532.2 84.6% .9% (many diffs)
67 mouse 13829 Dmtn dematin actin binding protein XM_017315838.1 84.6% .9% (many diffs)
68 mouse 13829 Dmtn dematin actin binding protein NM_001252665.1 83.5% .8% (many diffs)
69 mouse 13829 Dmtn dematin actin binding protein NM_001252666.1 83.5% .8% (many diffs)
70 mouse 13829 Dmtn dematin actin binding protein XM_006518542.3 83.5% .8% (many diffs)
71 mouse 13829 Dmtn dematin actin binding protein XM_017315840.1 83.5% .8% (many diffs)
72 mouse 13829 Dmtn dematin actin binding protein XM_006518522.2 80.8% .9% (many diffs)
73 mouse 13829 Dmtn dematin actin binding protein XM_006518523.3 80.8% .9% (many diffs)
74 mouse 13829 Dmtn dematin actin binding protein XM_006518525.3 80.8% .9% (many diffs)
75 mouse 13829 Dmtn dematin actin binding protein XM_006518526.2 80.8% .9% (many diffs)
76 mouse 13829 Dmtn dematin actin binding protein XM_006518527.2 80.8% .9% (many diffs)
77 mouse 13829 Dmtn dematin actin binding protein XM_011244949.2 80.8% .9% (many diffs)
78 mouse 13829 Dmtn dematin actin binding protein NM_001252664.1 79% .7% (many diffs)
79 mouse 13829 Dmtn dematin actin binding protein XM_006518539.2 79% .7% (many diffs)
80 mouse 13829 Dmtn dematin actin binding protein XM_006518540.3 79% .7% (many diffs)
81 mouse 13829 Dmtn dematin actin binding protein XM_006518541.2 79% .7% (many diffs)
82 mouse 13829 Dmtn dematin actin binding protein XM_006518533.3 75.4% .7% (many diffs)
83 mouse 13829 Dmtn dematin actin binding protein XM_006518534.2 75.4% .7% (many diffs)
84 mouse 13829 Dmtn dematin actin binding protein XM_006518535.3 75.4% .7% (many diffs)
85 mouse 13829 Dmtn dematin actin binding protein XM_006518536.2 75.4% .7% (many diffs)
86 mouse 13829 Dmtn dematin actin binding protein XM_006518537.2 75.4% .7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
108
ORF length:
42
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA CGGCTGCAGA AGCAACCACT TACCTCCCCC GGGAGCGTGA GCCCCTCCCG
121AGATTCCAGT GTGCCTGGCT CTCCCTCCAG CATCGTGGCC AAGATGGACA ATCAGGTGCT
181GGGCTACAAG GACCTGGCTG CCATCCCCAA GGACAAGGCC ATCCTGGACA TCGAGCGGCC
241CGACCTCATG ATCTACGAGC CTCACTTTAC TTATTCCCTC CTGGAACACG TGGAGCTGCC
301TCGCAGCCGC GAGCGCTCGC TGTCACCCAA ATCCACATCC CCCCCACCAT CCCCAGAGGT
361GTGGGCGGAC AGCCGGTCGC CTGGAATCAT CTCTCAGGCC TCGGCCCCCA GAACCACTGG
421AACCCCCCGG ACCAGCCTGC CCCATTTCCA CCACCCTGAG ACCTCCCGCC CAGATTCCAA
481CATCTACAAG AAGCCTCCCA TCTATAAGCA GAGAGAGTCC GTGGGAGGCA GCCCTCAGAC
541CAAGCACCTC ATCGAGGATC TCATCATCGA GTCATCCAAG TTTCCTGCAG CCCAGCCCCC
601AGACCCCAAC CAGCCAGCCA AAATCGAAAC CGACTACTGG CCATGCCCCC CGTCTCTGGC
661TGTTGTGGAG ACAGAATGGA GGAAGCGGAA GGCGTCTCGG AGGGGAGCAG AGGAAGAGGA
721GGAGGAGGAA GATGACGACT CTGGAGAGGA GATGAAGGCT CTCAGGGAGC GTCAGAGAGA
781GGAACTCAGT AAGGTTACTT CCAACTTGGG AAAGATGATC TTGAAAGAAG AGATGGAAAA
841GTCATTGCCG ATCCGAAGGA AAACCCGCTC TCTGCCTGAC CGGACACCCT TCCATACCTC
901CTTGCACCAG GGAACGTCTA AATCTTCCTC TCTCCCCGCC TATGGCAGGA CCACCCTGAG
961CCGGCTACAG TCCACAGAGT TCAGCCCATC AGGGAGTGAG ACTGGAAGCC CAGGCCTGCA
1021GATCTATCCC TATGAAATGC TAGTGGTGAC CAACAAGGGG CGAACCAAGC TGCCACCGGG
1081GGTGGATCGG ATGCGGCTTG AGAGGCATCT GTCTGCCGAG GACTTCTCAA GGGTATTTGC
1141CATGTCCCCT GAAGAGTTTG GCAAGCTGGC TCTGTGGAAG CGGAATGAGC TCAAGAAGAA
1201GGCCTCTCTC TTCTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt
1261atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)