Construct: ORF ccsbBroadEn_13938

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001687.1_s300c1, BRDN0000385634
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RAB6A (5870)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5870 RAB6A RAB6A, member RAS oncogene ... NM_002869.5 99.8% 99.5% 620delC
2 human 5870 RAB6A RAB6A, member RAS oncogene ... NM_198896.2 95% 98% (many diffs)
3 human 5870 RAB6A RAB6A, member RAS oncogene ... NM_001243719.1 83.9% 83.6% 0_1ins99;521delC
4 human 150786 RAB6D RAB6D, member RAS oncogene ... NM_001077637.1 78.8% 74.8% (many diffs)
5 human 84084 RAB6C RAB6C, member RAS oncogene ... NM_032144.3 78.7% 74.4% (many diffs)
6 human 5870 RAB6A RAB6A, member RAS oncogene ... NM_001243718.2 49.8% 49.5% 183_184ins312;308delC
7 mouse 19346 Rab6a RAB6A, member RAS oncogene ... NM_001163663.1 95.1% 98.5% (many diffs)
8 mouse 19346 Rab6a RAB6A, member RAS oncogene ... NM_024287.4 90.5% 97.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
690
ORF length:
624
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CACGGGCGGA GACTTCGGGA ATCCGCTGAG GAAATTCAAG CTGGTGTTCC
121TGGGGGAGCA AAGCGTTGGA AAGACATCTT TGATCACCAG ATTCATGTAT GACAGTTTTG
181ACAACACCTA TCAGGCAACA ATTGGCATTG ACTTTTTATC AAAAACTATG TACTTGGAGG
241ATCGAACAAT CAGGCTTCAG CTGTGGGATA CTGCGGGTCA GGAACGTTTC CGTAGCCTCA
301TTCCCAGTTA CATCCGTGAT TCTGCTGCAG CTGTAGTAGT TTACGATATC ACAAATGTTA
361ACTCATTCCA GCAAACTACA AAGTGGATTG ATGATGTCAG AACAGAAAGA GGAAGTGATG
421TTATCATCAT GCTAGTAGGA AATAAAACAG ATCTTGCTGA CAAGAGGCAA GTGTCAATTG
481AGGAGGGAGA GAGGAAAGCC AAAGAGCTGA ATGTTATGTT TATTGAAACT AGTGCAAAAG
541CTGGATACAA TGTAAAGCAG CTCTTTCGAC GTGTAGCAGC AGCTTTGCCG GGAATGGAAA
601GCACACAGGA CAGAAGCAGA GAAGATATGA TTGACATAAA ACTGGAAAAG CCTCAGGAGC
661AACCAGTCAG TGAAGGAGGC TGTTCTGCTA CCCAACTTTC TTGTACAAAG Ttggcattat
721aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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