Construct: ORF ccsbBroadEn_14023

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015119.1_s300c1, BRDN0000457380
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GCC2 (9648)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9648 GCC2 GRIP and coiled-coil domain... XM_006712871.1 99.9% 99.8% 1426C>A;3097C>G
2 human 9648 GCC2 GRIP and coiled-coil domain... XM_011512213.2 99.2% 99.1% 0_1ins33;1393C>A;3064C>G
3 human 9648 GCC2 GRIP and coiled-coil domain... NM_181453.4 93.9% 93.8% 1_303del;1729C>A;3400C>G
4 human 9648 GCC2 GRIP and coiled-coil domain... XM_006712870.3 93.7% 93.7% 1_312del;1738C>A;3409C>G
5 human 9648 GCC2 GRIP and coiled-coil domain... XR_001739080.1 78.9% (many diffs)
6 human 9648 GCC2 GRIP and coiled-coil domain... NR_028063.2 69.5% (many diffs)
7 human 9648 GCC2 GRIP and coiled-coil domain... XR_923067.2 68.7% (many diffs)
8 human 9648 GCC2 GRIP and coiled-coil domain... XR_001739079.1 68.2% (many diffs)
9 human 9648 GCC2 GRIP and coiled-coil domain... XR_001739078.1 67% (many diffs)
10 human 9648 GCC2 GRIP and coiled-coil domain... XM_006712872.3 51.4% 50.7% (many diffs)
11 mouse 70297 Gcc2 GRIP and coiled-coil domain... XM_017314082.1 36.8% 37.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
4818
ORF length:
4749
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAAGCAAGAG GTTGAGGATT CTGTAACAAA GATGGGAGAT GCACATAAGG
121AGTTGGAACA ATCACATATA AACTATGTGA AAGAAATTGA AAATTTGAAA AATGAGTTGA
181TGGCAGTACG TTCCAAATAC AGTGAAGACA AAGCTAACTT ACAAAAGCAG CTGGAAGAAG
241CAATGAATAC GCAATTAGAA CTTTCAGAAC AACTTAAATT TCAGAACAAC TCTGAAGATA
301ATGTTAAAAA ACTACAAGAA GAGATTGAGA AAATTAGGCC AGGCTTTGAG GAGCAAATTT
361TATATCTGCA AAAGCAATTA GACGCTACCA CTGATGAAAA GAAGGAAACA GTTACTCAAC
421TCCAAAATAT CATTGAGGCT AATTCTCAGC ATTACCAAAA AAATATTAAT AGTTTGCAGG
481AAGAGCTTTT ACAGTTGAAA GCTATACACC AAGAAGAGGT GAAAGAGTTG ATGTGCCAGA
541TTGAAGCATC AGCTAAGGAA CATGAAGCAG AGATAAATAA GTTGAACGAG CTAAAAGAGA
601ACTTAGTAAA ACAATGTGAG GCAAGTGAAA AGAACATCCA GAAGAAATAT GAATGTGAGT
661TAGAAAATTT AAGGAAAGCC ACCTCAAATG CAAACCAAGA CAATCAGATA TGTTCTATTC
721TCTTGCAAGA AAATACATTT GTAGAACAAG TAGTAAATGA AAAAGTCAAA CACTTAGAAG
781ATACCTTAAA AGAACTTGAA TCTCAACACA GTATCTTAAA AGATGAGGTA ACTTATATGA
841ATAATCTTAA GTTAAAACTT GAAATGGATG CTCAACATAT AAAGGATGAG TTTTTTCATG
901AACGGGAAGA CTTAGAGTTT AAAATTAATG AATTATTACT AGCTAAAGAA GAACAGGGCT
961GTGTAATTGA AAAATTAAAA TCTGAGCTAG CAGGTTTAAA TAAACAGTTT TGCTATACTG
1021TAGAACAGCA TAACAGAGAA GTACAGAGTC TTAAGGAACA ACATCAAAAA GAAATATCAG
1081AACTAAATGA GACATTTTTG TCAGATTCAG AAAAAGAAAA ATTAACATTA ATGTTTGAAA
1141TACAGGGTCT TAAGGAACAG TGTGAAAACC TACAGCAAGA AAAGCAAGAA GCAATTTTAA
1201ATTATGAGAG TTTACGAGAG ATTATGGAAA TTTTACAAAC AGAACTGGGG GAATCTGCTG
1261GAAAAATAAG TCAAGAGTTC GAATCAATGA AGCAACAGCA AGCATCTGAT GTTCATGAAC
1321TGCAGCAGAA GCTCAGAACT GCTTTTACTG AAAAAGATGC CCTTCTCGAA ACTGTGAATC
1381GCCTCCAGGG AGAAAATGAA AAGTTACTAT CTCAACAAGA ATTGGTACCA GAACTTGAAA
1441ATACCATAAA GAACCTTCAA GAAAAGAATG GAGTATACTT ACTTAGTCTC AGTAAAAGAG
1501ATACCATGTT AAAAGAATTA GAAGGAAAGA TAAATTCTCT TACTGAGGAA AAAGATGATT
1561TTATAAATAA ACTGAAAAAT TCCCATGAAG AAATGGATAA TTTCCATAAG AAATGTGAAA
1621GGGAAGAAAG ATTGATTCTT GAACTTGGGA AGAAAGTAGA GCAAACAATC CAGTACAACA
1681GTGAACTAGA ACAAAAGGTA AATGAATTAA CAGGAGGACT AGAGGAGACT TTAAAAGAAA
1741AGGATCAAAA TGACCAAAAA CTAGAAAAAC TTATGGTTCA AATGAAAGTT CTCTCTGAAG
1801ACAAAGAAGT ATTGTCAGCT GAAGTGAAGT CTCTTTATGA GGAAAACAAT AAACTCAGTT
1861CAGAAAAAAA ACAGTTGAGT AGGGATTTGG AGGTTTTTTT GTCTCAAAAA GAAGATGTTA
1921TCCTTAAAGA ACATATTACT CAATTAGAAA AGAAACTTCA GTTAATGGTT GAAGAGCAAG
1981ATAATTTAAA TAAACTGCTT GAAAATGAGC AAGTTCAGAA GTTATTTGTT AAAACTCAGT
2041TGTATGGTTT TCTTAAAGAA ATGGGATCAG AAGTTTCAGA AGACAGTGAA GAGAAAGATG
2101TTGTTAATGT CCTACAGGCA GTCGGTGAAT CCTTGGCAAA AATAAATGAG GAAAAATGCA
2161ACCTGGCTTT TCAGCGTGAT GAAAAAGTAT TAGAGTTAGA AAAAGAGATT AAGTGCCTTC
2221AAGAAGAGAG TGTAGTTCAG TGTGAAGAAC TTAAGTCTTT ATTGAGAGAC TATGAGCAAG
2281AGAAAGTTCT CTTAAGGAAA GAGTTAGAAG AAATACAGTC AGAAAAAGAG GCCCTGCAGT
2341CTGATCTTCT AGAAATGAAG AATGCTAATG AAAAAACAAG GCTTGAAAAT CAGAATCTTT
2401TAATTCAAGT TGAAGAAGTA TCTCAAACAT GTAGCAAAAG TGAAATCCAT AATGAAAAAG
2461AAAAATGTTT TATAAAGGAA CATGAAAACC TAAAGCCACT ACTAGAACAA AAAGAATTAC
2521GAGATAGGAG AGCAGAGTTG ATACTATTAA AGGATTCCTT AGCAAAATCA CCTTCTGTAA
2581AAAATGATCC TCTGTCTTCA GTAAAAGAGT TGGAAGAAAA AATAGAAAAT CTGGAAAAAG
2641AATGCAAAGA AAAGGAGGAG AAAATAAATA AGATAAAATT AGTTGCCGTA AAGGCAAAGA
2701AAGAACTAGA TTCCAGCAGA AAAGAGACCC AGACTGTGAA GGAAGAACTT GAATCTCTTC
2761GATCAGAAAA GGACCAGTTA TCTGCTTCCA TGAGAGATCT CATTCAAGGA GCAGAAAGCT
2821ATAAGAATCT TTTATTAGAA TATGAAAAGC AGTCAGAGCA ACTGGATGTG GAAAAAGAAC
2881GTGCTAATAA TTTTGAGCAT CGTATTGAAG ACCTTACAAG ACAATTAAGA AATTCGACTT
2941TGCAGTGTGA AACAATAAAT TCTGATAATG AAGATCTCCT GGCTCGTATT GAGACATTAC
3001AGTCTAATGC CAAATTATTA GAAGTACAGA TTTTAGAAGT CCAGAGAGCC AAAGCAATGG
3061TAGACAAAGA ATTAGAAGCT GAAAAACTTC AGAAAGAACA GAAGATAAAG GAACATGCCA
3121CTACTGTAAA TGAACTTGAA GAACTTCAGG TACAACTTCA AAAGGAAAAG AAACAGCTTC
3181AGAAAACCAT GCAAGAATTA GAGCTGGTTA AAAAGGATGC CCAACAAACC ACATTGATGA
3241ATATGGAAAT AGCTGATTAT GAACGTTTGA TGAAAGAACT AAATCAAAAG TTAACTAATA
3301AAAACAACAA GATAGAAGAT TTGGAGCAAG AAATAAAAAT TCAAAAACAG AAACAAGAAA
3361CCCTACAAGA AGAAATAACT TCATTACAGT CTTCAGTACA ACAATATGAA GAAAAAAACA
3421CCAAAATCAA GCAATTGCTT GTGAAAACCA AAAAGGAACT GGCAGATTCA AAGCAAGCAG
3481AAACTGATCA CTTAATACTT CAAGCATCTT TAAAAGGTGA GCTGGAGGCA AGCCAGCAGC
3541AAGTAGAAGT CTATAAAATA CAGCTGGCTG AAATAACATC AGAGAAGCAC AAAATCCACG
3601AGCACCTGAA AACCTCTGCG GAACAGCACC AGCGTACGCT AAGTGCATAC CAGCAGAGAG
3661TGACAGCACT ACAGGAAGAG TGCCGTGCTG CCAAGGCAGA ACAAGCTACT GTAACCTCTG
3721AATTCGAGAG CTACAAAGTC CGAGTTCATA ATGTTCTAAA ACAACAGAAA AATAAATCTA
3781TGTCTCAGGC TGAAACTGAG GGCGCTAAAC AAGAAAGGGA ACATCTGGAA ATGCTGATTG
3841ACCAGCTAAA AATCAAATTA CAAGATAGCC AAAATAACTT ACAGATTAAT GTATCTGAAC
3901TTCAAACATT GCAGTCTGAA CATGATACAC TGCTAGAAAG GCACAACAAG ATGCTGCAGG
3961AAACTGTGTC CAAAGAGGCG GAACTCCGGG AAAAATTGTG TTCAATACAG TCAGAGAACA
4021TGATGATGAA ATCTGAACAT ACACAGACTG TGAGTCAGCT AACATCCCAG AACGAGGTCC
4081TTCGAAATAG CTTCCGAGAT CAAGTGCGAC ATTTGCAGGA AGAACACAGA AAGACAGTGG
4141AGACATTACA GCAGCAGCTC TCCAAGATGG AAGCACAGCT CTTCCAGCTT AAGAATGAAC
4201CGACCACAAG AAGCCCAGTT TCCTCTCAAC AATCTTTGAA GAACCTTCGA GAAAGGAGAA
4261ACACAGACCT CCCGCTTCTA GACATGCACA CTGTAACCCG GGAAGAGGGA GAAGGCATGG
4321AGACAACTGA TACGGAGTCT GTGTCTTCCG CCAGCACATA CACACAGTCT TTAGAGCAGC
4381TGCTTAACTC TCCCGAAACT AAACTTGAGC CTCCATTATG GCATGCTGAA TTTACCAAAG
4441AAGAATTGGT TCAGAAGCTC AGTTCCACCA CAAAAAGTGC AGATCACTTA AACGGCCTGC
4501TTCGGGAAAC AGAAGCAACC AATGCAATTC TTATGGAGCA AATTAAGCTT CTCAAAAGTG
4561AAATAAGAAG ATTGGAAAGG AATCAAGAGC GAGAGAAGTC TGCAGCTAAC CTGGAATACT
4621TGAAGAACGT CTTGCTGCAG TTCATTTTCT TGAAACCAGG TAGTGAAAGA GAGAGACTTC
4681TTCCTGTTAT AAATACGATG TTGCAGCTCA GCCCTGAAGA AAAGGGAAAA CTTGCTGCGG
4741TTGCTCAAGG TGAGGAAGAA AATGCTTCCC GTTCTTCTGG ATGGGCATCC TATCTTCATA
4801GTTGGTCTGG ACTTCGATTG CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt
4861gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)