Transcript: Human XM_006712871.1

PREDICTED: Homo sapiens GRIP and coiled-coil domain containing 2 (GCC2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
GCC2 (9648)
Length:
6800
CDS:
281..5032

Additional Resources:

NCBI RefSeq record:
XM_006712871.1
NBCI Gene record:
GCC2 (9648)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006712871.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000147536 GAGAGCAGAGTTGATACTATT pLKO.1 2740 CDS 100% 13.200 9.240 N GCC2 n/a
2 TRCN0000147313 GCAAGAATTAGAGCTGGTTAA pLKO.1 3403 CDS 100% 10.800 7.560 N GCC2 n/a
3 TRCN0000099953 CCCTACAAGAAGAAATAACTT pLKO.1 3573 CDS 100% 5.625 3.375 N Gcc2 n/a
4 TRCN0000147782 GCTGACATGAAGAGTTTAGTT pLKO.1 6503 3UTR 100% 5.625 3.375 N GCC2 n/a
5 TRCN0000371194 ACCATACCAACTGGAATTTAG pLKO_005 5377 3UTR 100% 13.200 6.600 Y RGPD6 n/a
6 TRCN0000369313 ACGTCTTGCTGCAGTTCATTT pLKO_005 4839 CDS 100% 13.200 6.600 Y RGPD4 n/a
7 TRCN0000150103 CCAACTGGAATTTAGGCTTTA pLKO.1 5383 3UTR 100% 10.800 5.400 Y GCC2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006712871.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14023 pDONR223 100% 99.9% 99.8% None 1426C>A;3097C>G n/a
2 ccsbBroad304_14023 pLX_304 0% 99.9% 99.8% V5 1426C>A;3097C>G n/a
3 TRCN0000477870 CAGGGTCGGGCAAGAATTGAGACT pLX_317 12% 99.9% 99.8% V5 1426C>A;3097C>G n/a
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