Construct: ORF ccsbBroadEn_14064

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011571.1_s300c1, BRDN0000387309
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
NUDT4 (11163)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11163 NUDT4 nudix hydrolase 4 NM_019094.6 99.4% 46.6% 254_254delAinsNAN
2 human 440672 NUDT4B nudix hydrolase 4B NM_001355407.1 99.2% 46.4% 253_254insN;255_257delGCAinsN
3 human 11163 NUDT4 nudix hydrolase 4 NM_199040.4 99.2% 46.4% 253_254insN;255_257delGCAinsN
4 human 11163 NUDT4 nudix hydrolase 4 NM_001301023.2 70.6% 17.7% 0_1ins156;98_98delAinsNAN
5 human 11163 NUDT4 nudix hydrolase 4 NM_001301024.2 70.6% 17.7% 0_1ins156;98_98delAinsNAN
6 human 11163 NUDT4 nudix hydrolase 4 XM_011537795.2 70.6% 17.7% 0_1ins156;98_98delAinsNAN
7 human 11163 NUDT4 nudix hydrolase 4 XM_011537796.2 70.6% 17.7% 0_1ins156;98_98delAinsNAN
8 human 11163 NUDT4 nudix hydrolase 4 NM_001301022.2 70.5% 18% 0_1ins156;97_98insN;99_101delGCAinsN
9 human 11163 NUDT4 nudix hydrolase 4 XM_011537794.2 70.5% 18% 0_1ins156;97_98insN;99_101delGCAinsN
10 human 170688 NUDT4P2 nudix hydrolase 4 pseudogene 2 NR_104005.1 14% (many diffs)
11 mouse 71207 Nudt4 nudix (nucleoside diphospha... NM_027722.4 89.2% 46.1% (many diffs)
12 mouse 71207 Nudt4 nudix (nucleoside diphospha... XM_006514116.2 89.1% 45.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
360
ORF length:
294
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT GAAGTTCAAG CCCAACCAGA CGCGGACCTA CGACCGCGAG GGCTTCAAGA
121AGCGGGCGGC GTGCCTGTGC TTCCGGAGCG AGCAGGAGGA CGAGGTGCTG CTGGTGAGTA
181GCAGCCGGTA CCCAGACCAG TGGATTGTCC CAGGAGGAGG AATGGAACCC GAGGAGGAAC
241CTGGCGGTGC TGCCGTGAGG GAAGTTTATG AGGAGGCTGG AGTCAAAGGA AAACTAGGCA
301GACTTCTGGG CATATTTGNA NGAACCAAGA CCGAAAGCAC AGAACATATG TTTATGTTCT
361AACAGTCACT GAAATATTAG AAGATTGGGA AGATTCTGTT AATATTGGAA GGAAGAGAGA
421GTGGTTCAAA GTAGAAGATG CTATCAAAGT TCTCCAGTGT CATAAACCTG TACATGCAGA
481GTATCTGGAA AAGCTAAAGC TGGGTTGTTC CCCAGCCAAT GGAAATTCTA CAGTCCCTTC
541CCTTCCGGAT AATAATGCCT TGTTTGTAAC CGCTGCACAG ACCTCTGGGT TGCCATCTAG
601TGTAAGATAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt gcttatcaat
661ttgttgcaac gaac

Download FASTA (ORF) (Full)

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