Transcript: Human NR_104005.1

Homo sapiens nudix hydrolase 4 pseudogene 2 (NUDT4P2), non-coding RNA.

Source:
NCBI, updated 2018-05-24
Taxon:
Homo sapiens (human)
Gene:
NUDT4P2 (170688)
Length:
3838
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_104005.1
NBCI Gene record:
NUDT4P2 (170688)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_104005.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000296267 TCCCTTCCCTTCCGGATAATA pLKO_005 867 3UTR 100% 15.000 7.500 Y NUDT4 n/a
2 TRCN0000379595 TCTATTTCTCACAGCATATTT pLKO_005 1210 3UTR 100% 15.000 7.500 Y NUDT4 n/a
3 TRCN0000051961 GTTCTAACAGTCACTGAAATA pLKO.1 689 3UTR 100% 13.200 6.600 Y NUDT4 n/a
4 TRCN0000289588 GTTCTAACAGTCACTGAAATA pLKO_005 689 3UTR 100% 13.200 6.600 Y NUDT4 n/a
5 TRCN0000050843 CCACAAATTGACACTTTCTAT pLKO.1 2859 3UTR 100% 5.625 2.813 Y NUDT4B n/a
6 TRCN0000051960 CCGGATAATAATGCCTTGTTT pLKO.1 878 3UTR 100% 5.625 2.813 Y NUDT4 n/a
7 TRCN0000289586 CCGGATAATAATGCCTTGTTT pLKO_005 878 3UTR 100% 5.625 2.813 Y NUDT4 n/a
8 TRCN0000051958 GTTGCCATCTAGTGTAAGATA pLKO.1 922 3UTR 100% 5.625 2.813 Y NUDT4 n/a
9 TRCN0000050846 GAGTGGTTCAAAGTAGAAGAT pLKO.1 752 3UTR 100% 4.950 2.475 Y NUDT4B n/a
10 TRCN0000051962 CTCCAGTGTCATAAACCTGTA pLKO.1 785 3UTR 100% 4.050 2.025 Y NUDT4 n/a
11 TRCN0000289529 CTCCAGTGTCATAAACCTGTA pLKO_005 785 3UTR 100% 4.050 2.025 Y NUDT4 n/a
12 TRCN0000050845 CGTGAGGGAAGTTTATGAGGA pLKO.1 586 3UTR 100% 2.640 1.320 Y NUDT4B n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_104005.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000465307 CCGACAAATGACTTCGTTAGGTGT pLX_317 60.3% 14% V5 1_397del;651_653delAGC;941_3838del n/a
2 ccsbBroadEn_14064 pDONR223 100% 14% None (many diffs) n/a
3 ccsbBroad304_14064 pLX_304 0% 14% V5 (not translated due to prior stop codon) (many diffs) n/a
Download CSV