Construct: ORF ccsbBroadEn_14157
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016635.1_s300c1, BRDN0000386671
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- TM6SF1 (53346)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | NM_001330385.3 | 76.7% | 4.7% | (many diffs) |
| 2 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | XM_017022329.2 | 76.7% | 4.7% | (many diffs) |
| 3 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | XM_017022330.1 | 76.7% | 4.7% | (many diffs) |
| 4 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | XM_017022331.2 | 76.7% | 4.7% | (many diffs) |
| 5 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | XR_931848.2 | 56.6% | (many diffs) | |
| 6 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | XR_001751320.1 | 46.2% | (many diffs) | |
| 7 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | XM_017022322.1 | 45.5% | 2.8% | (many diffs) |
| 8 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | NM_001144903.3 | 41.9% | 2.6% | (many diffs) |
| 9 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | NM_001353878.2 | 39.4% | 2.5% | (many diffs) |
| 10 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | XM_017022321.1 | 39.4% | 2.4% | (many diffs) |
| 11 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | NM_023003.5 | 38.3% | 2.4% | (many diffs) |
| 12 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | XM_011521679.2 | 38% | 2.4% | (many diffs) |
| 13 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | XM_017022320.1 | 36.3% | 2.2% | (many diffs) |
| 14 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | XR_001751318.1 | 35.9% | (many diffs) | |
| 15 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | NR_148561.2 | 24.9% | (many diffs) | |
| 16 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | NR_148560.2 | 24.1% | (many diffs) | |
| 17 | human | 53346 | TM6SF1 | transmembrane 6 superfamily... | XR_001751319.2 | 14.1% | (many diffs) | |
| 18 | mouse | 107769 | Tm6sf1 | transmembrane 6 superfamily... | NM_145375.4 | 34.9% | 2.4% | (many diffs) |
| 19 | mouse | 107769 | Tm6sf1 | transmembrane 6 superfamily... | NR_111910.1 | 19.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 171
- ORF length:
- 105
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG TGCCTCGCGG CCACCGGGGT CTTCGTGCTG TCCCTCTCGG CCATCCCGGT 121 CACCTATGTC TTCAACCACC TGGCGGCCCA GCATGATTCC TGGACTATTG TAGGGGTTGC 181 TGCCCTCATC CTGTTCCTGG TAGCACTGCT GGCTCGTGTC CTCGTCAAAA GAAAACCACC 241 CCGGGACCCA CTGTTCTATG TGTATGCAGT TTTTGGATTT ACCAGCGTGG TGAACCTCAT 301 CATAGGACTG GAGCAAGATG GAATCATTGA CGGGTTCATG ACACACTACT TGAGAGAGGG 361 TGAACCGTAT CTGAACACCG CATATGGGCA CATGATCTGC TACTGGGATG GCTCTGCTCA 421 TTATCTGATG TACCTGGTGA TGGTGGCAGC CATAGCATGG GAATGCTGGC ATATATGTTT 481 TATTCTGTTC CTTACTTTGT GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca 541 ttgcttatca atttgttgca acgaac