Transcript: Human XR_001751320.1

PREDICTED: Homo sapiens transmembrane 6 superfamily member 1 (TM6SF1), transcript variant X10, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TM6SF1 (53346)
Length:
937
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001751320.1
NBCI Gene record:
TM6SF1 (53346)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001751320.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000138288 CCGTATCTGAACACCGCATAT pLKO.1 395 3UTR 100% 10.800 15.120 N TM6SF1 n/a
2 TRCN0000135885 GCTCTGCTCATTATCTGATGT pLKO.1 441 3UTR 100% 4.950 3.465 N TM6SF1 n/a
3 TRCN0000137625 GCTTAGTGGTTCCTGGATGTT pLKO.1 628 3UTR 100% 4.950 3.465 N TM6SF1 n/a
4 TRCN0000135809 CCACTGTTCTATGTGTATGCA pLKO.1 278 3UTR 100% 3.000 2.100 N TM6SF1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001751320.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12020 pDONR223 100% 60.1% None 1_94del;659_937del n/a
2 ccsbBroad304_12020 pLX_304 0% 60.1% V5 1_94del;659_937del n/a
3 TRCN0000480894 TTGCCTACGGTTGCTGGAAAACCC pLX_317 62.5% 60.1% V5 1_94del;659_937del n/a
4 ccsbBroadEn_14157 pDONR223 100% 46.2% None (many diffs) n/a
5 ccsbBroad304_14157 pLX_304 0% 46.2% V5 (not translated due to prior stop codon) (many diffs) n/a
6 TRCN0000472759 ACGGCCTATTAGACCTGAAACGTC pLX_317 100% 46.2% V5 (not translated due to prior stop codon) (many diffs) n/a
Download CSV