Construct: ORF ccsbBroadEn_14189
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015918.1_s300c1, BRDN0000457325
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- ZNF532 (55205)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001318726.2 | 84.5% | 83% | 2914G>A;3228delC;3302_3903del |
| 2 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001318727.2 | 84.5% | 83% | 2914G>A;3228delC;3302_3903del |
| 3 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001318728.2 | 84.5% | 83% | 2914G>A;3228delC;3302_3903del |
| 4 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001353525.2 | 84.5% | 83% | 2914G>A;3228delC;3302_3903del |
| 5 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001353526.2 | 84.5% | 83% | 2914G>A;3228delC;3302_3903del |
| 6 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001353527.2 | 84.5% | 83% | 2914G>A;3228delC;3302_3903del |
| 7 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001353528.2 | 84.5% | 83% | 2914G>A;3228delC;3302_3903del |
| 8 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001353529.2 | 84.5% | 83% | 2914G>A;3228delC;3302_3903del |
| 9 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_018181.6 | 84.5% | 83% | 2914G>A;3228delC;3302_3903del |
| 10 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_017025812.1 | 84.5% | 83% | 2914G>A;3228delC;3302_3903del |
| 11 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_017025814.1 | 84.5% | 83% | 2914G>A;3228delC;3302_3903del |
| 12 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_017025815.1 | 84.5% | 83% | 2914G>A;3228delC;3302_3903del |
| 13 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_024451198.1 | 84.5% | 83% | 2914G>A;3228delC;3302_3903del |
| 14 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_024451199.1 | 84.5% | 83% | 2914G>A;3228delC;3302_3903del |
| 15 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001353530.2 | 84.2% | 83.3% | (many diffs) |
| 16 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001353531.2 | 84.2% | 83.3% | (many diffs) |
| 17 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001353532.2 | 84.2% | 83.3% | (many diffs) |
| 18 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_017025809.1 | 84% | 83.3% | (many diffs) |
| 19 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_017025811.2 | 82.6% | 81.2% | (many diffs) |
| 20 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_011526067.2 | 82.2% | 81.9% | (many diffs) |
| 21 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_017025810.1 | 81.7% | 80.3% | (many diffs) |
| 22 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001353538.2 | 80.9% | 74.7% | (many diffs) |
| 23 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001353533.2 | 79.9% | 78.5% | (many diffs) |
| 24 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_017025820.1 | 79.9% | 78.5% | (many diffs) |
| 25 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001353534.2 | 79.6% | 78.7% | (many diffs) |
| 26 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_017025829.1 | 76.9% | 70.9% | (many diffs) |
| 27 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_017025830.1 | 76.7% | 70.8% | (many diffs) |
| 28 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001353535.2 | 71.1% | 69.7% | (many diffs) |
| 29 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001353536.2 | 71.1% | 69.7% | (many diffs) |
| 30 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_017025825.2 | 71.1% | 69.7% | (many diffs) |
| 31 | human | 55205 | ZNF532 | zinc finger protein 532 | NM_001353537.2 | 70.8% | 69.9% | (many diffs) |
| 32 | human | 55205 | ZNF532 | zinc finger protein 532 | XR_935229.2 | 69.7% | (many diffs) | |
| 33 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_017025823.1 | 68% | 66.6% | (many diffs) |
| 34 | human | 55205 | ZNF532 | zinc finger protein 532 | XM_017025824.1 | 67.7% | 66.8% | (many diffs) |
| 35 | human | 55205 | ZNF532 | zinc finger protein 532 | XR_935231.2 | 67.2% | 1_265del;2612_2721del;2846_2847ins829 | |
| 36 | human | 55205 | ZNF532 | zinc finger protein 532 | XR_935228.2 | 54.6% | (many diffs) | |
| 37 | human | 55205 | ZNF532 | zinc finger protein 532 | XR_001753209.1 | 54.6% | (many diffs) | |
| 38 | human | 55205 | ZNF532 | zinc finger protein 532 | XR_001753211.1 | 50.4% | (many diffs) | |
| 39 | human | 55205 | ZNF532 | zinc finger protein 532 | XR_001753212.1 | 49.5% | (many diffs) | |
| 40 | human | 55205 | ZNF532 | zinc finger protein 532 | NR_148460.2 | 49.2% | (many diffs) | |
| 41 | human | 55205 | ZNF532 | zinc finger protein 532 | NR_148459.2 | 49% | (many diffs) | |
| 42 | human | 55205 | ZNF532 | zinc finger protein 532 | XR_002958179.1 | 41.3% | (many diffs) | |
| 43 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_011246956.1 | 75.9% | 77.7% | (many diffs) |
| 44 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_006526039.3 | 73.9% | 75.6% | (many diffs) |
| 45 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_006526040.3 | 73.9% | 75.6% | (many diffs) |
| 46 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_006526041.3 | 73.9% | 75.6% | (many diffs) |
| 47 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_006526042.3 | 73.9% | 75.6% | (many diffs) |
| 48 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_006526043.3 | 73.9% | 75.6% | (many diffs) |
| 49 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_006526044.2 | 73.9% | 75.6% | (many diffs) |
| 50 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_011246950.2 | 73.9% | 75.6% | (many diffs) |
| 51 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_011246951.2 | 73.9% | 75.6% | (many diffs) |
| 52 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_011246952.2 | 73.9% | 75.6% | (many diffs) |
| 53 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_011246953.1 | 73.9% | 75.6% | (many diffs) |
| 54 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_011246954.2 | 73.9% | 75.6% | (many diffs) |
| 55 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_011246955.1 | 73.9% | 75.6% | (many diffs) |
| 56 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_017317928.1 | 73.9% | 75.6% | (many diffs) |
| 57 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_011246959.1 | 71.6% | 75% | (many diffs) |
| 58 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XM_017317932.1 | 61.9% | 64.7% | (many diffs) |
| 59 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XR_001782374.1 | 56.8% | (many diffs) | |
| 60 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XR_001782373.1 | 42.6% | (many diffs) | |
| 61 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XR_001782380.1 | 39.7% | (many diffs) | |
| 62 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XR_001782378.1 | 31.3% | (many diffs) | |
| 63 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XR_001782375.1 | 30.9% | (many diffs) | |
| 64 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XR_001782379.1 | 30.6% | (many diffs) | |
| 65 | mouse | 328977 | Zfp532 | zinc finger protein 532 | XR_001782376.1 | 29.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3369
- ORF length:
- 3300
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACCATGGGG GATATGAAGA CCCCAGACTT TGATGACCTC CTGGCAGCAT 121 TTGACATCCC AGATATGGTC GATCCTAAAG CAGCTATTGA GTCTGGACAC GATGACCATG 181 AAAGCCACAT GAAGCAGAAT GCTCACGGAG AGGATGACTC CCACGCACCA TCATCTTCTG 241 ATGTGGGTGT CAGCGTTATC GTCAAGAATG TTCGGAACAT TGACTCTTCC GAGGGCGGGG 301 AGAAAGACGG CCACAACCCC ACTGGCAATG GCTTACATAA TGGGTTTCTC ACAGCATCCT 361 CCCTTGACAG TTACAGTAAA GATGGAGCAA AGTCCTTGAA AGGAGATGTG CCTGCCTCTG 421 AGGTGACACT GAAAGACTCG ACATTCAGCC AGTTTAGCCC GATCTCCAGT GCTGAAGAGT 481 TTGATGACGA CGAGAAGATT GAGGTGGATG ACCCCCCTGA CAAGGAGGAC ATGCGATCAA 541 GCTTCAGGTC GAATGTGTTG ACGGGGTCGG CTCCCCAGCA GGACTACGAT AAGCTGAAGG 601 CACTCGGAGG GGAAAACTCC AGCAAAACTG GACTCTCTAC GTCAGGCAAT GTGGAGAAAA 661 ACAAAGCTGT TAAGAGAGAA ACAGAAGCCA GTTCTATAAA CCTGAGTGTT TATGAACCTT 721 TTAAAGTCAG AAAAGCAGAG GATAAATTGA AGGAAAGCTC TGACAAGGTG CTGGAAAACA 781 GAGTCCTAGA TGGGAAGCTG AGCTCCGAGA AGAATGACAC CAGCCTCCCC AGCGTTGCGC 841 CATCAAAGAC AAAGTCGTCC TCCAAGCTCT CGTCCTGCAT CGCTGCCATC GCGGCTCTCA 901 GCGCTAAAAA GGCGGCTTCA GACTCCTGCA AAGAACCAGT GGCCAATTCG AGGGAATCCT 961 CCCCGTTACC AAAAGAAGTA AATGACAGTC CGAGAGCCGC TGACAAGTCT CCTGAATCCC 1021 AGAATCTCAT CGACGGGACC AAAAAACCAT CCCTGAAGCA ACCGGATAGT CCCAGAAGCA 1081 TCTCAAGTGA GAACAGCAGC AAAGGATCCC CGTCCTCTCC CGCAGGGTCC ACACCAGCAA 1141 TCCCCAAAGT CCGCATAAAA ACCATTAAGA CATCTTCTGG GGAAATCAAG AGAACAGTGA 1201 CCAGGGTATT GCCAGAAGTG GATCTTGACT CTGGAAAGAA ACCTTCCGAG CAGACAGCGT 1261 CCGTGATGGC CTCTGTGACA TCCCTTCTGT CGTCTCCAGC ATCAGCCGCC GTCCTTTCCT 1321 CTCCCCCCAG GGCGCCTCTC CAGTCTGCGG TCGTGACCAA TGCAGTTTCC CCTGCAGAGC 1381 TCACCCCCAA ACAGGTCACA ATCAAGCCTG TGGCTACTGC TTTCCTCCCA GTGTCTGCTG 1441 TGAAGACGGC AGGATCCCAA GTCATTAATT TGAAGCTCGC TAACAACACC ACGGTGAAAG 1501 CCACGGTCAT ATCTGCTGCC TCTGTCCAGA GTGCCAGCAG CGCCATCATT AAAGCTGCCA 1561 ACGCCATCCA GCAGCAAACT GTCGTGGTGC CGGCATCCAG CCTGGCCAAT GCCAAACTCG 1621 TGCCAAAGAC TGTGCACCTT GCCAACCTTA ACCTTTTGCC TCAGGGTGCC CAGGCCACCT 1681 CTGAACTCCG CCAAGTGCTA ACCAAACCTC AGCAACAAAT AAAGCAGGCA ATAATCAATG 1741 CAGCAGCCTC GCAACCCCCC AAAAAGGTGT CTCGAGTCCA GGTGGTGTCG TCCTTGCAGA 1801 GTTCTGTGGT GGAAGCTTTC AACAAGGTGC TGAGCAGTGT CAATCCAGTC CCTGTTTACA 1861 TCCCAAACCT CAGTCCTCCC GCCAATGCAG GGATCACGTT ACCGACGCGT GGGTACAAGT 1921 GCTTGGAGTG TGGGGACTCC TTTGCACTTG AAAAGAGTCT GACCCAGCAC TACGACAGAC 1981 GGAGCGTGCG CATCGAAGTA ACGTGCAACC ATTGTACAAA GAACCTCGTT TTTTACAACA 2041 AATGCAGCCT CCTTTCCCAT GCCCGTGGGC ATAAGGAGAA AGGGGTGGTA ATGCAATGCT 2101 CCCACTTAAT TTTAAAGCCA GTCCCAGCAG ATCAAATGAT AGTTTCTCCG TCAAGCAATA 2161 CTTCCACTTC AACTTCCACT CTTCAGAGCC CTGTGGGAGC TGGCACACAC ACTGTCACAA 2221 AAATTCAGTC TGGCATAACT GGGACAGTCA TATCGGCTCC TTCAAGCACT CCCATCACCC 2281 CAGCCATGCC CCTAGATGAA GACCCCTCCA AACTGTGTAG ACATAGTCTA AAATGTTTGG 2341 AGTGTAATGA AGTCTTCCAG GACGAGACAT CACTGGCTAC ACATTTCCAG CAGGCTGCAG 2401 ATACGAGTGG ACAAAAGACT TGCACTATCT GCCAGATGCT GCTTCCTAAC CAGTGCAGTT 2461 ATGCATCACA CCAGAGAATC CATCAGCACA AATCTCCCTA CACCTGCCCT GAGTGTGGGG 2521 CCATCTGCAG GTCGGTGCAC TTCCAGACCC ACGTCACCAA GAACTGTCTG CACTACACGA 2581 GGAGAGTTGG TTTTCGATGT GTGCATTGCA ATGTTGTGTA CTCTGATGTG GCTGCTCTGA 2641 AGTCTCACAT TCAAGGTTCT CACTGTGAAG TCTTCTACAA GTGTCCTATT TGTCCAATGG 2701 CGTTTAAGTC TGCCCCAAGC ACACATTCCC ACGCCTACAC ACAGCATCCT GGCATCAAGA 2761 TAGGAGAACC AAAAATAATA TATAAGTGTT CCATGTGCGA CACTGTGTTC ACCCTGCAAA 2821 CCTTGCTGTA TCGCCACTTT GACCAACACA TTGAAAACCA GAAGGTGTCT GTTTTCAAGT 2881 GTCCAGACTG TTCTCTTTTA TATGCACAGA AGCAACTTAT GATGGACCAT ATCAAGTCTA 2941 TGCATGGAAC ATTGAAAAGT ATTGAAGGGC CTCCAAACTT GAGTATAAAC TTGCCTTTGA 3001 GCATTAAGCC TGCAACTCAA AATTCAGCAA ATCAGAACAA AGAGGACACC AAATCCATGA 3061 ATGGGAAAGA GAAATTGGAA AAGAAATCTC CATCTCCTGT GAAAAAATCA ATGGAAACCA 3121 AGAAAGTGGC CAGTCCTGGG TGGACGTGTT GGGAGTGTGA CTGCCTGTTC ATGCAGAGAG 3181 ATGTGTACAT ATCCCACGTG AGGAAGGAGC ACGGGAAGCA AATGAAGAAA CACCCCTGCC 3241 GCCAGTGTGA CAAGTCTTTC AGCTCGTCCC ACAGCCTGTG CCGGCACAAC CGGATAAGCA 3301 CAAAGGCATC AGGAAAGTGT ACGCCTGCTC GCACTGCCCA GACTCCAGAC GTACCTTTAC 3361 CAAACGTTTA GCCAACTTTC TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa 3421 tttgttgcaa cgaac