Construct: ORF ccsbBroadEn_14227

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016368.1_s300c1, BRDN0000388263
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RALGAPA2 (57186)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57186 RALGAPA2 Ral GTPase activating prote... XM_017027976.1 17.9% 18% 1_3180del;3893_3963del
2 human 57186 RALGAPA2 Ral GTPase activating prote... XM_011529311.2 17.6% 17.7% 1_3099del;3812_4032del
3 human 57186 RALGAPA2 Ral GTPase activating prote... XM_017027975.1 17.3% 17.3% 1_3180del;3893_4113del
4 human 57186 RALGAPA2 Ral GTPase activating prote... XM_017027973.1 14.1% 14.2% 1_4089del;4802_5022del
5 human 57186 RALGAPA2 Ral GTPase activating prote... XM_017027974.1 14.1% 14.2% 1_4089del;4802_5022del
6 human 57186 RALGAPA2 Ral GTPase activating prote... XM_011529310.2 13.1% 13.1% 1_4491del;5204_5424del
7 human 57186 RALGAPA2 Ral GTPase activating prote... NM_020343.4 12.6% 12.7% 1_4836del;5549_5619del
8 human 57186 RALGAPA2 Ral GTPase activating prote... XM_006723599.1 12.3% 12.3% 1_4977del;5690_5760del
9 human 57186 RALGAPA2 Ral GTPase activating prote... XM_005260768.2 12.3% 12.3% 1_4836del;5549_5769del
10 human 57186 RALGAPA2 Ral GTPase activating prote... XM_006723598.1 12% 12% 1_4977del;5690_5910del
11 human 57186 RALGAPA2 Ral GTPase activating prote... XM_011529309.1 11.8% 11.7% (many diffs)
12 human 57186 RALGAPA2 Ral GTPase activating prote... XM_017027972.1 9.7% 9.6% (many diffs)
13 human 57186 RALGAPA2 Ral GTPase activating prote... XR_937111.2 7.2% 1_5135del;5848_9866del
14 human 57186 RALGAPA2 Ral GTPase activating prote... XR_001754352.1 6.3% 1_5135del;5848_11290del
15 mouse 241694 Ralgapa2 Ral GTPase activating prote... NM_001033348.3 11.3% 12.3% (many diffs)
16 mouse 241694 Ralgapa2 Ral GTPase activating prote... XM_006499519.3 11% 12% (many diffs)
17 mouse 241694 Ralgapa2 Ral GTPase activating prote... XM_006499517.3 11% 11.9% (many diffs)
18 mouse 241694 Ralgapa2 Ral GTPase activating prote... XR_866276.2 6.5% (many diffs)
19 mouse 241694 Ralgapa2 Ral GTPase activating prote... XR_866277.2 6.5% (many diffs)
20 mouse 241694 Ralgapa2 Ral GTPase activating prote... XR_866275.2 5.5% (many diffs)
21 mouse 241694 Ralgapa2 Ral GTPase activating prote... XR_374470.3 5.3% (many diffs)
22 mouse 241694 Ralgapa2 Ral GTPase activating prote... XR_374469.3 5.1% (many diffs)
23 mouse 241694 Ralgapa2 Ral GTPase activating prote... XR_374468.3 5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
780
ORF length:
714
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA TTCTTGGGAC AGAAGGAAGA ATTTTCATCT ATTGAAGAAA AATTCAAAAT
121TATTGAGAGA GCTGAAAAAT TTGGACTCCC GCCAGTGCCG TGAGACACAC AAAATCGCAG
181TGTTTTACAT TGCTGAAGGT CAAGAAGACA AGTGTTCAAT CCTCTCTAAT GAAAGAGGAA
241GCCAAGCATA TGAAGACTTT GTTGCTGGAC TTGGATGGGA GGTGGATCTC TCCACCCACT
301GTGGGTTCAT GGGTGGCCTT CAGCGCAATG GCAGCACCGG GCAGACGGCC CCTTACTATG
361CTACCTCAAC TGTGGAAGTG ATTTTCCATG TTTCCACTCG AATGCCGTCA GACTCAGATG
421ATTCCCTCAC CAAAAAGCTT CGTCACTTGG GGAATGACGA GGTCCATATC GTCTGGTCTG
481AACACTCCAG AGACTACCGC AGGGGTATTA TCCCAACTGC CTTTGGAGAT GTTTCAATCA
541TTATTTACCC AATGAAGAAT CACATGTTCT TCATCGCGAT AACGAAGAAA CCTGAGGTTC
601CATTTTTTGG GCCTCTGTTT GATGGAGCCA TAGTGAGTGG GAAGCTGCTG CCAAGCCTTG
661TATGTGCCAC GTGCATCAAC GCCAGCAGGG CTGTGAAGTG CCTCATCCCA CTCTACCAGA
721GCTTCTATGA AGAGCGAGCT CTGTATCTCG AAGCAATAAT TCAGAACCAC CGCGAAGTAC
781CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac
841gaac

Download FASTA (ORF) (Full)