Construct: ORF ccsbBroadEn_14277

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009199.1_s300c1, BRDN0000398467
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
TRAPPC13 (80006)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80006 TRAPPC13 trafficking protein particl... NM_001243737.1 84.5% 28.6% 1_189del;545_546insN;1192A>G
2 human 80006 TRAPPC13 trafficking protein particl... NM_001093756.1 84.3% 28.7% (many diffs)
3 human 80006 TRAPPC13 trafficking protein particl... NM_001093755.1 83.4% 28.2% 1_189del;546_563delinsN;1210A>G
4 human 80006 TRAPPC13 trafficking protein particl... NM_024941.4 83.1% 28.2% (many diffs)
5 human 80006 TRAPPC13 trafficking protein particl... NM_001365342.1 72.9% 6.8% 0_1ins282;74_75insN;721A>G
6 human 80006 TRAPPC13 trafficking protein particl... NM_001365343.1 72.6% 6.8% (many diffs)
7 mouse 66975 Trappc13 trafficking protein particl... NM_001093760.1 74.7% 28.3% (many diffs)
8 mouse 66975 Trappc13 trafficking protein particl... XM_006517737.3 74.5% 28.4% (many diffs)
9 mouse 66975 Trappc13 trafficking protein particl... NM_025879.2 73.7% 27.9% (many diffs)
10 mouse 66975 Trappc13 trafficking protein particl... NM_001093759.1 73.5% 28% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
429
ORF length:
360
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCTGACTTTA CCACAGAATT TTGGGAATAT ATTTTTGGGA GAGACCTTTT
121CCAGTTATAT CAGCGTTCAT AATGATAGCA ATCAAGTTGT AAAAGACATA TTAGTAAAAG
181CTGATCTTCA GACAAGTTCT CAGCGTTTAA ATCTTTCAGC CTCCAATGCT GCAGTGGCTG
241AACTTAAACC GGATTGTTGT ATTGATGATG TCATACATCA TGAAGTCAAA GAAATTGGAA
301CACACATCTT GGTATGTGCT GTGAGTTATA CAACTCAGGC TGGAGAAAAA ATGTATTTCA
361GAAAATTCTT CAAATTTCAG GTTCTCAAAC CATTGGATGT GAAAACCAAA TTTTACAATG
421CAGANGACTG ATGAAGTATT TCTGGAAGCC CAGATTCAGA ATATGACAAC CTCACCTATG
481TTTATGGAGA AGGTTTCACT GGAGCCATCT ATTATGTACA ATGTAACAGA ATTAAATTCA
541GTCAGCCAAG CTGGAGAATG TGTGTCTACG TTTGGGTCAA GAGCATATTT GCAACCAATG
601GATACACGCC AGTACTTATA CTGCCTAAAG CCAAAGAATG AATTTGCAGA AAAAGCAGGC
661ATCATTAAGG GAGTAACAGT AATTGGAAAA TTGGATATAG TATGGAAAAC AAATCTAGGT
721GAAAGGGGAA GGTTACAGAC CAGCCAACTT CAAAGAATGG CTCCAGGTTA TGGAGATGTT
781AGGTTGTCTT TGGAGGCAAT ACCAGATACC GTAAACCTTG AAGAACCTTT TCATATTACC
841TGTAAAATAA CAAACTGCAG CAGTGAAAGG ACTATGGATC TGGTTTTGGA AATGTGCAAT
901ACCAATTCCA TCCACTGGTG TGGAATTTCA GGAAGACAGC TGGGAAAGCT GCATCCAAGT
961TCTTCGCTCT GTCTTGCCCT TACTCTGCTT TCTTCAGTAC AGGGACTGCA AAGCATCTCT
1021GGCTTAAGAC TAACAGACAC ATTCTTAAAG AGAACATATG AATATGATGA CGTCGCACAA
1081GTCTGTGTGG TATCTTCTGC CATTAAAGTG GAAAGCTTGC CAACTTTCTT GTACAAAGTt
1141ggcattataa gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)