Construct: ORF ccsbBroadEn_14279

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010456.1_s300c1, BRDN0000397513
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FBXL18 (80028)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80028 FBXL18 F-box and leucine rich repe... NM_001363442.2 53.1% 53% 1090C>T;1091_1092insT;1094_2052delinsC
2 human 80028 FBXL18 F-box and leucine rich repe... NM_001363441.2 52.3% 52.2% 1090C>T;1091_1092insT;1094_2085delinsC
3 human 80028 FBXL18 F-box and leucine rich repe... NM_024963.6 50.6% 50.5% 1090C>T;1091_1092insT;1094_2154delinsC
4 human 80028 FBXL18 F-box and leucine rich repe... NM_001321213.2 45.4% 45.3% 1090C>T;1091_1092insT;1094_2403delinsC
5 human 80028 FBXL18 F-box and leucine rich repe... NM_001367780.1 36.7% 36.6% (many diffs)
6 human 80028 FBXL18 F-box and leucine rich repe... NM_001367781.1 36.7% 36.6% (many diffs)
7 mouse 231863 Fbxl18 F-box and leucine-rich repe... XM_006504694.3 57.1% 60.7% (many diffs)
8 mouse 231863 Fbxl18 F-box and leucine-rich repe... NM_001033312.3 42.2% 44.8% (many diffs)
9 mouse 231863 Fbxl18 F-box and leucine-rich repe... XM_006504693.3 39.8% 42.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1161
ORF length:
1095
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CAGCTCCGGA GAGGACATAT CCAATGATGA TGATGACATG CACCCTGCAG
121CAGCCGGGAT GGCAGACGGG GTCCACCTCC TAGGGTTCTC TGATGAGATC CTCCTTCACA
181TCCTGAGTCA CGTCCCCAGC ACAGATCTGA TTCTGAACGT CCGGCGTACC TGTCGGAAGC
241TTGCAGCCCT GTGCCTTGAC AAGAGCCTCA TCCACACCGT GTTGCTGCAA AAGGACTATC
301AGGCGAGCGA GGACAAAGTG AGGCAGCTGG TGAAGGAGAT CGGCCGGGAG ATCCAGCAGC
361TGAGCATGGC TGGCTGCTAC TGGCTGCCTG GCTCCACCGT GGAACACGTG GCCCGCTGCC
421GCAGCCTGGT GAAGGTGAAC CTCTCGGGCT GCCACCTCAC TTCCCTGCGC CTCTCCAAGA
481TGCTCTCGGC CCTGCAGCAC CTGCGCTCGC TGGCCATCGA CGTGAGCCCC GGCTTCGACG
541CCAGCCAGCT GAGCAGCGAG TGCAAGGCCA CCCTGAGCCG CGTGCGGGAG CTCAAGCAGA
601CGCTGTTCAC TCCCTCCTAC GGCGTGGTGC CCTGCTGCAC CAGCCTAGAG AAGCTGCTGC
661TCTACTTCGA GATTCTGGAC CGCACGCGCG AGGGCGCCAT CCTCTCGGGC CAGCTTATGG
721TGGGCCAGAG CAACGTGCCG CACTACCAGA ACCTGCGGGT CTTCTATGCG CGCCTGGCCC
781CCGGCTACAT CAACCAGGAG GTGGTGCGGC TCTACCTGGC TGTGCTTAGC GACCGCACTC
841CTCAGAACCT CCACGCCTTC CTCATCTCCG TCCCTGGCAG CTTCGCGGAG AGCGGCGCCA
901CCAAGAACCT CCTGGACTCC ATGGCGCGCA ATGTCGTGCT GGATGCCCTG CAGCTGCCCA
961AGTCCTGGCT GAACGGCTCT TCCCTCCTGC AGCACATGAA ATTCAACAAC CCGTTCTACT
1021TCAGTTTCAG CCGCTGTACC CTGTCAGGCG GCCATCTGAT CCAGCAGGTC ATCAACGGCG
1081GGAAGGACCT GCGGAGCCTG GCCAGCTTGA ACCTCAGCGG CTGCGTCCAC TGCCTGTCCC
1141CAGACTCGCT GCTCTGTCAC TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1201attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)