Construct: ORF ccsbBroadEn_14344

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007988.1_s300c1, BRDN0000390619
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DMKN (93099)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 93099 DMKN dermokine NM_033317.5 99.7% 99.1% 272T>C;1280A>C;1419delG
2 human 93099 DMKN dermokine XM_011527507.2 90.9% 89.2% (many diffs)
3 human 93099 DMKN dermokine XM_011527506.2 90.6% 90% (many diffs)
4 human 93099 DMKN dermokine XM_011527509.2 89.8% 89.2% (many diffs)
5 human 93099 DMKN dermokine XM_024451775.1 89.8% 89.2% (many diffs)
6 human 93099 DMKN dermokine XM_011527504.2 88.5% 88% (many diffs)
7 human 93099 DMKN dermokine XM_011527505.2 88.3% 86.6% (many diffs)
8 human 93099 DMKN dermokine XM_011527503.2 87.5% 86.9% (many diffs)
9 human 93099 DMKN dermokine XM_011527508.2 87.3% 86.7% (many diffs)
10 human 93099 DMKN dermokine XM_011527502.2 87.2% 86.6% (many diffs)
11 human 93099 DMKN dermokine XM_011527501.2 85.6% 85% (many diffs)
12 human 93099 DMKN dermokine XM_011527500.2 85.2% 84.7% (many diffs)
13 human 93099 DMKN dermokine XM_011527499.2 84.8% 84.2% (many diffs)
14 human 93099 DMKN dermokine XM_011527497.2 84.6% 84.1% (many diffs)
15 human 93099 DMKN dermokine XM_011527498.2 84.6% 84.1% (many diffs)
16 human 93099 DMKN dermokine XM_011527496.2 84.3% 83.7% (many diffs)
17 human 93099 DMKN dermokine XM_011527494.2 82.5% 81.9% (many diffs)
18 human 93099 DMKN dermokine XM_011527495.2 82.5% 81.9% (many diffs)
19 human 93099 DMKN dermokine NM_001190347.2 81.1% 80.5% (many diffs)
20 human 93099 DMKN dermokine NM_001126058.3 80% 78.9% (many diffs)
21 human 93099 DMKN dermokine NM_001126056.3 78.7% 78.1% (many diffs)
22 human 93099 DMKN dermokine NM_001126057.3 78% 77% (many diffs)
23 human 93099 DMKN dermokine NM_001190349.2 76.4% 75.4% (many diffs)
24 human 93099 DMKN dermokine NM_001190348.2 72.4% 71.5% (many diffs)
25 human 93099 DMKN dermokine XR_935874.2 62.5% (many diffs)
26 human 93099 DMKN dermokine XR_935873.2 60.6% (many diffs)
27 human 93099 DMKN dermokine XR_935872.2 59.5% (many diffs)
28 human 93099 DMKN dermokine XR_935871.2 58.6% (many diffs)
29 human 93099 DMKN dermokine XR_002958384.1 46.8% (many diffs)
30 human 93099 DMKN dermokine XR_002958383.1 46% (many diffs)
31 human 93099 DMKN dermokine NM_001126059.4 38.1% 35.9% (many diffs)
32 human 93099 DMKN dermokine XM_024451776.1 37.2% 35% (many diffs)
33 human 93099 DMKN dermokine NM_001308380.2 37% 34.8% (many diffs)
34 human 93099 DMKN dermokine XM_017027475.1 35.7% 33.6% (many diffs)
35 human 93099 DMKN dermokine XM_006723484.1 35.6% 33.5% (many diffs)
36 human 93099 DMKN dermokine XM_011527513.1 35.2% 31.9% (many diffs)
37 human 93099 DMKN dermokine NM_001308383.2 34.5% 32.3% (many diffs)
38 human 93099 DMKN dermokine XM_006723477.1 33.6% 31.6% (many diffs)
39 human 93099 DMKN dermokine NM_001352328.2 33.6% 31.4% (many diffs)
40 human 93099 DMKN dermokine XM_006723489.1 31.2% 29.1% (many diffs)
41 human 93099 DMKN dermokine XM_006723503.3 31.2% 29.1% (many diffs)
42 human 93099 DMKN dermokine XM_006723493.2 30.9% 28.7% (many diffs)
43 human 93099 DMKN dermokine NR_033746.2 30.7% (many diffs)
44 human 93099 DMKN dermokine NR_147959.2 30.4% (many diffs)
45 human 93099 DMKN dermokine XM_024451777.1 27.3% 26.6% (many diffs)
46 human 93099 DMKN dermokine XM_006723494.2 26.5% 25.9% (many diffs)
47 human 93099 DMKN dermokine NM_001352329.2 25.7% 25.2% 0_1ins1059;221A>C;360delG
48 human 93099 DMKN dermokine NM_001352330.2 25.7% 25.2% 0_1ins1059;221A>C;360delG
49 human 93099 DMKN dermokine XM_024451778.1 25.7% 25.2% 0_1ins1059;221A>C;360delG
50 human 93099 DMKN dermokine XM_024451779.1 25.7% 25.2% 0_1ins1059;221A>C;360delG
51 human 93099 DMKN dermokine NM_001352331.2 18.6% 16.2% (many diffs)
52 human 93099 DMKN dermokine NM_001035516.4 16.8% 14% (many diffs)
53 human 93099 DMKN dermokine NM_001352332.2 15% 12.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1494
ORF length:
1428
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA GTTCCAGGGG CCCCTGGCCT GCCTCCTGCT GGCCCTCTGC CTGGGCAGTG
121GGGAGGCTGG CCCCCTGCAG AGCGGAGAGG AAAGCACTGG GACAAATATT GGGGAGGCCC
181TTGGACATGG CCTGGGAGAC GCCCTGAGCG AAGGGGTGGG AAAGGCCATT GGCAAAGAGG
241CCGGAGGGGC AGCTGGCTCT AAAGTCAGTG AGGCCCTTGG CCAAGGGACC AGAGAAGCAG
301TTGGCACTGG AGTCAGGCAG GTTCCAGGCT TTGGCGCAGC AGATGCTTTG GGCAACAGGG
361TCGGGGAAGC AGCCCATGCT CTGGGAAACA CTGGGCACGA GATTGGCAGA CAGGCAGAAG
421ATGTCATTCG ACACGGAGCA GATGCTGTCC GCGGCTCCTG GCAGGGGGTG CCTGGCCACA
481ATGGTGCTTG GGAAACTTCT GGAGGCCATG GCATCTTTGG CTCTCAAGGT GGCCTTGGAG
541GCCAGGGCCA GGGCAATCCT GGAGGTCTGG GGACTCCGTG GGTCCACGGA TACCCCGGAA
601ACTCAGCAGG CAGCTTTGGA ATGAATCCTC AGGGAGCTCC CTGGGGTCAA GGAGGCAATG
661GAGGGCCACC AAACTTTGGG ACCAACACTC AGGGAGCTGT GGCCCAGCCT GGCTATGGTT
721CAGTGAGAGC CAGCAACCAG AATGAAGGGT GCACGAATCC CCCACCATCT GGCTCAGGTG
781GAGGCTCCAG CAACTCTGGG GGAGGCAGCG GCTCACAGTC GGGCAGCAGT GGCAGTGGCA
841GCAATGGTGA CAACAACAAT GGCAGCAGCA GTGGTGGCAG CAGCAGTGGC AGCAGCAGTG
901GCGGCAGCAG TGGCGGCAGC AGTGGTGGCA GCAGTGGCAA CAGTGGTGGC AGCAGAGGTG
961ACAGCGGCAG TGAGTCCTCC TGGGGATCCA GCACCGGCTC CTCCTCCGGC AACCACGGTG
1021GGAGCGGCGG AGGAAATGGA CATAAACCCG GGTGTGAAAA GCCAGGGAAT GAAGCCCGCG
1081GGAGCGGGGA ATCTGGGATT CAGAACTCTG AGACGTCTCC TGGGATGTTT AACTTTGACA
1141CTTTCTGGAA GAATTTTAAA TCCAAGCTGG GTTTCATCAA CTGGGATGCC ATAAACAAGA
1201ACCAGGTCCC GCCCCCCAGC ACCCGAGCCC TCCTCTACTT CAGCCGACTC TGGGAGGATT
1261TCAAACAGAA CACTCCTTTC CTCAACTGGA AAGCAATTAT TGAGGGTGCG GACGCGTCAT
1321CACTGCAGAA ACGTGCAGGC AGAGCCGATC AGAACTACAA TTACAACCAG CATGCGTATC
1381CCACTGCCTA TGGTGGGAAG TACTCAGTCA AGACCCCTGC AAAGGGGGGA GTCTCACCTT
1441CTTCCTCGGC TTCCCGGGTG CAACCTGGCC TGCTGCAGTG GGTAAGTTTT GGTACCCAAC
1501TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

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