Construct: ORF ccsbBroadEn_14345

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004137.1_s300c1, BRDN0000385771
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NAPRT (93100)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 93100 NAPRT nicotinate phosphoribosyltr... NM_001363146.1 99.6% 99.6% 13G>C;108G>A;229C>T
2 human 93100 NAPRT nicotinate phosphoribosyltr... XM_017013979.2 79.4% 72.2% (many diffs)
3 human 93100 NAPRT nicotinate phosphoribosyltr... XM_024447333.1 72.4% 65.5% (many diffs)
4 human 93100 NAPRT nicotinate phosphoribosyltr... NM_145201.6 57.4% 57.4% (many diffs)
5 human 93100 NAPRT nicotinate phosphoribosyltr... NM_001286829.2 55% 55% (many diffs)
6 human 93100 NAPRT nicotinate phosphoribosyltr... NM_001363145.1 52.4% 52.4% (many diffs)
7 human 93100 NAPRT nicotinate phosphoribosyltr... XM_017013976.2 50.5% 50.5% (many diffs)
8 human 93100 NAPRT nicotinate phosphoribosyltr... XM_024447332.1 49.1% 44% (many diffs)
9 human 93100 NAPRT nicotinate phosphoribosyltr... XM_017013977.2 45.7% 41.9% (many diffs)
10 human 93100 NAPRT nicotinate phosphoribosyltr... XM_017013975.2 44.7% 41.4% (many diffs)
11 human 93100 NAPRT nicotinate phosphoribosyltr... XM_017013978.2 40.2% 36.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
996
ORF length:
930
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT GGCGCCACCA GCTGGTGAGG GCCCTGGGGT GGACCTGGCG GCCAAAGCCC
121AGGTGTGGCT GGAGCAGGTG TGTGCCCACC TGGGGCTGGG GGTGCAGGAG CCACATCCAG
181GCGAGCGGGC AGCCTTTGTG GCCTATGCCT TGGCTTTTCC CCGGGCCTTC CAGGGCCTCC
241TGGACACCTA CAGCGTGTGG AGGAGTGGTC TCCCCAACTT CCTAGCAGTC GCCTTGGCCC
301TGGGAGAGCT GGGCTACCGG GCAGTGGGCG TGAGGCTGGA CAGTGGTGAC CTGCTACAGC
361AGGCTCAGGA GATCCGCAAG GTCTTCCGAG CTGCTGCAGC CCAGTTCCAG GTGCCCTGGC
421TGGAGTCAGT CCTCATCGTA GTCAGCAACA ACATTGACGA GGAGGCGCTG GCCCGACTGG
481CCCAGGAGGG CAGTGAGGTG AATGTCATTG GCATTGGCAC CAGTGTGGTC ACCTGCCCCC
541AACAGCCTTC CCTGGGTGGC GTCTATAAGC TGGTGGCCGT GGGGGGCCAG CCACGAATGA
601AGCTGACCGA GGACCCCGAG AAGCAGACGT TGCCTGGGAG CAAGGCTGCT TTCCGGCTCC
661TGGGCTCTGA CGGGTCTCCA CTCATGGACA TGCTGCAGTT AGCAGAAGAG CCAGTGCCAC
721AGGCTGGGCA GGAGCTGAGG GTGTGGCCTC CAGGGGCCCA GGAGCCCTGC ACCGTGAGGC
781CAGCCCAGGT GGAGCCACTA CTGCGGCTCT GCCTCCAGCA GGGACAGCTG TGTGAGCCGC
841TCCCATCCCT GGCAGAGTCT AGAGCCTTGG CCCAGCTGTC CCTGAGCCGA CTCAGCCCTG
901AGCACAGGCG GCTGCGGAGC CCTGCACAGT ACCAGGTGGT GCTGTCCGAG AGGCTGCAGG
961CCCTGGTGAA CAGTCTGTGT GCGGGGCAGT CCCCCTGCCC AACTTTCTTG TACAAAGTtg
1021gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)