Construct: ORF ccsbBroadEn_14372

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002042.1_s300c1, BRDN0000386270
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PODN (127435)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 127435 PODN podocan XM_011540677.2 99.6% 99.2% (many diffs)
2 human 127435 PODN podocan NM_001199080.4 65.3% 65% (many diffs)
3 human 127435 PODN podocan NM_001199081.3 65.3% 65% (many diffs)
4 human 127435 PODN podocan NM_153703.5 65.3% 65% (many diffs)
5 human 127435 PODN podocan XM_005270457.3 65.3% 65% (many diffs)
6 human 127435 PODN podocan XM_017000294.2 61.4% 61.1% (many diffs)
7 human 127435 PODN podocan XR_001736973.2 39.2% (many diffs)
8 mouse 242608 Podn podocan XM_011240532.1 86.7% 92.2% (many diffs)
9 mouse 242608 Podn podocan XM_011240534.1 86.7% 92.2% (many diffs)
10 mouse 242608 Podn podocan XM_030253568.1 86.7% 92.2% (many diffs)
11 mouse 242608 Podn podocan NM_001285956.1 56.8% 60.4% (many diffs)
12 mouse 242608 Podn podocan NM_001285958.1 56.8% 60.4% (many diffs)
13 mouse 242608 Podn podocan NM_172874.3 56.8% 60.4% (many diffs)
14 mouse 242608 Podn podocan XM_006503092.4 56.8% 60.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1272
ORF length:
1206
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT CAGCGGCTAC AGCAACGTCG AGGTCCTCAT CCTGTCCAGC AACTTCCTGC
121GCCACGTGCC CAAGCACCTG CCGCCTGCCC TGTACAAGCT GCACCTCAAG AACAACAAGC
181TGGAGAAGAT CCCCCCGGGG GCCTTCAGCG AGCTGAGCAG CCTGCGCGAG CTATACCTGC
241AGAACAACTA CCTGACTGAC GAGGGCCTGG ACAACGAGAC CTTCTGGAAG CTCTCCAGCC
301TGGAGTACCT GGATCTGTCC AGCAACAACC TGTCTCGGGT CCCAGCTGGG CTGCCGCGCA
361GCCTGGTGCT GCTGCACTTG GAGAAGAACG CCATCCGGAG CGTGGACGCG AATGTGCTGA
421CCCCCATCCG CAGCCTGGAG TACCTGCTGC TGCACAGCAA CCAGCTGCGG GAGCAGGGCA
481TCCACCCACT GGCCTTCCAG GGCCTCAAGC GGTTGCACAC GGTGCACCTG TACAACAACG
541CGCTGGAGCG CGTGCCCAGT GGCCTGCCTC GCCGCGTGCG CACCCTCATG ATCCTGCACA
601ACCAGATCAC AGGCATTGGC CGCGAAGACT TTGCCACCAC CTACTTCCTG GAGGAGCTCA
661ACCTCAGCTA CAACCGCATC ACCAGCCCAC AGGTGCACCG CGACGCCTTC CGCAAGCTGC
721GCCTGCTGCG CTCGCTGGAC CTGTCGGGCA ACCGGCTGCA CACGCTGCCA CCTGGGCTGC
781CTCGAAATGT CCATGTGCTG AAGGTCAAGC GCAATGAGCT GGCTGCCTTG GCACGAGGGG
841CGCTGGCGGG CATGGCTCAG CTGCGTGAGC TGTACCTCAC CAGCAACCGA CTGCGCAGCC
901GAGCCCTGGG CCCCCGTGCC TGGGTGGACC TCGCCCATCT GCAGCTGCTG GACATCGCCG
961GGAATCAGCT CACAGAGATC CCCGAGGGGC TCCCCGAGTC ACTTGAGTAC CTGTACCTGC
1021AGAACAACAA GATTAGTGCG GTGCCCGCCA ATGCCTTCGA CTCCACGCCC AACCTCAAGG
1081GGATCTTTCT CAGGTTTAAC AAGCTGGCTG TGGGCTCCGT GGTGGACAGT GCCTTCCGGA
1141GGCTGAAGCA CCTGCAGGTC TTGGACATTG AAGGCAACTT AGAGTTTGGT GACATTTCCA
1201AGGACCGTGG CCGCTTGGGG AAGGAAAAGG AGGAGGAGGA AGAGGAGGAG GAGGAGGAAG
1261AGGAAACAAG ATACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
1321caatttgttg caacgaac

Download FASTA (ORF) (Full)

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