Construct: ORF ccsbBroadEn_14391

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003878.1_s300c1, BRDN0000457135
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PLEKHA7 (144100)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 144100 PLEKHA7 pleckstrin homology domain ... NM_001329631.2 66.5% 66.5% (many diffs)
2 human 144100 PLEKHA7 pleckstrin homology domain ... NM_175058.5 66.4% 66.4% (many diffs)
3 human 144100 PLEKHA7 pleckstrin homology domain ... XM_017017242.2 65% 65% (many diffs)
4 human 144100 PLEKHA7 pleckstrin homology domain ... XM_017017241.2 62.8% 62.8% (many diffs)
5 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448366.1 59.1% 59.1% (many diffs)
6 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448367.1 59.1% 59.1% (many diffs)
7 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448368.1 59.1% 59.1% (many diffs)
8 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448369.1 59.1% 59.1% (many diffs)
9 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448365.1 58.6% 58.6% (many diffs)
10 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448364.1 58.5% 58.5% (many diffs)
11 human 144100 PLEKHA7 pleckstrin homology domain ... NM_001329630.2 58.4% 58.4% (many diffs)
12 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448363.1 57.4% 57.3% (many diffs)
13 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448362.1 57% 57% (many diffs)
14 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448361.1 56.4% 56.4% (many diffs)
15 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448360.1 56.2% 56.2% (many diffs)
16 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448359.1 55.6% 55.6% (many diffs)
17 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448358.1 55.6% 55.6% (many diffs)
18 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448356.1 54.5% 54.5% (many diffs)
19 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448357.1 54.5% 54.5% (many diffs)
20 human 144100 PLEKHA7 pleckstrin homology domain ... XM_024448370.1 46.3% 46.3% (many diffs)
21 human 144100 PLEKHA7 pleckstrin homology domain ... XR_002957126.1 38.1% (many diffs)
22 mouse 233765 Plekha7 pleckstrin homology domain ... NM_001305189.1 63.3% 66.7% (many diffs)
23 mouse 233765 Plekha7 pleckstrin homology domain ... NM_172743.3 62.1% 65.4% (many diffs)
24 mouse 233765 Plekha7 pleckstrin homology domain ... XM_017322197.1 60.9% 64.2% (many diffs)
25 mouse 233765 Plekha7 pleckstrin homology domain ... NM_001305190.1 60.7% 64% (many diffs)
26 mouse 233765 Plekha7 pleckstrin homology domain ... XM_017322196.1 59.4% 62.6% (many diffs)
27 mouse 233765 Plekha7 pleckstrin homology domain ... XM_017322193.1 55.1% 58% (many diffs)
28 mouse 233765 Plekha7 pleckstrin homology domain ... XM_017322191.1 53.9% 56.7% (many diffs)
29 mouse 233765 Plekha7 pleckstrin homology domain ... XM_017322189.1 52.7% 55.5% (many diffs)
30 mouse 233765 Plekha7 pleckstrin homology domain ... NM_001305186.1 52.5% 55.2% (many diffs)
31 mouse 233765 Plekha7 pleckstrin homology domain ... XM_017322188.1 52.2% 54.9% (many diffs)
32 mouse 233765 Plekha7 pleckstrin homology domain ... XM_017322187.1 52.1% 54.9% (many diffs)
33 mouse 233765 Plekha7 pleckstrin homology domain ... XM_017322185.1 51% 53.7% (many diffs)
34 mouse 233765 Plekha7 pleckstrin homology domain ... XM_017322194.1 51% 53.7% (many diffs)
35 mouse 233765 Plekha7 pleckstrin homology domain ... XM_017322195.1 51% 53.7% (many diffs)
36 mouse 233765 Plekha7 pleckstrin homology domain ... NM_001305185.1 50.6% 53.2% (many diffs)
37 mouse 233765 Plekha7 pleckstrin homology domain ... XM_017322192.1 49.3% 52% (many diffs)
38 mouse 233765 Plekha7 pleckstrin homology domain ... XM_017322190.1 48.7% 51.3% (many diffs)
39 mouse 233765 Plekha7 pleckstrin homology domain ... XR_001785538.1 47.5% (many diffs)
40 mouse 233765 Plekha7 pleckstrin homology domain ... XM_017322186.1 47.1% 49.6% (many diffs)
41 mouse 233765 Plekha7 pleckstrin homology domain ... XM_017322198.1 45.3% 43.9% (many diffs)
42 mouse 233765 Plekha7 pleckstrin homology domain ... XR_001785539.1 34.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2313
ORF length:
2244
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGATTTACCC ACTGGCCCAA GAGGCCAGCA GGCACAGCCC CAACGGGCAG
121AGAAGAATGG AATGCTGCCT GCCTCATATG GCCCAGGAGA ACAGAATGGG ACTGGTGGGT
181ACCAGCGGGC CTTTCCTCCC AGGACCAACC CCGAAAAACA CAGCCAAAGG AAGAGCAATC
241TGGCCCAGGT GGAGCACTGG GCAAGGGCCC AGAAAGGGGA TAGCAGGAGT CTTCCCTTGG
301ACCAGACGCT TCCTCGCCAG GGTCCTGGCC AATCCCTGTC CTTCCCAGAA AACTACCAGA
361CTCTTCCCAA TAGCACCCGA CACCCCTCGG GGGGCTCCTC GCCACCTCCC CGAAACCTGC
421CAAGTGACTA CAAGTATGCG CAGGACCGAG CCAGCCACCT GAAGATGTCG AGTGAAGAGC
481GCCGGGCGCA CCGGGATGGC ACCGTGTGGC AGCTCTACGA GTGGCAGCAG CGCCAGCAGT
541TCCGGCACGG CAGCCCCACA GCGCCCATCT GCCTTGGCTC CCCAGAGTTC ACCGACCAGG
601GCCGGAGCAG GAGCATGCTA GAGGTGCCCC GCTCCATCTC TGTGCCTCCA TCTCCCTCGG
661ACATCCCTCC CCCAGGACCC CCAAGGGTCT TCCCACCCCG GCGGCCACAC ACACCAGCAG
721AGCGAGTCAC AGTGAAGCCA CCGGACCAGA GGAGGAGTGT GGACATCTCG CTGGGGGATT
781CTCCAAGGAG GGCACGGGGC CACGCTGTCA AGAACTCATC TCATGTGGAC CGACGCTCCA
841TGCCCTCCAT GGGTTACATG ACCCACACCG TCAGCGCTCC CAGTTTACAT GGAAAATCGG
901CTGATGATAC CTACCTCCAG CTGAAGAAAG ACCTGGAGTA CCTGGATCTA AAGATGACAG
961GCCGGGACCT TCTCAAGGAT CGAAGTCTGA AGCCTGTGAA GATCGCTGAG AGCGACACTG
1021ACGTCAAACT GAGCATCTTC TGTGAACAAG ACAGGGTCCT CCAGGACTTG GAAGACAAGA
1081TACGAGCCCT TAAAGAGAAC AAAGACCAGC TAGAATCTGT GCTGGAGGTG TTGCACAGAC
1141AGATGGAGCA GTACCGAGAC CAGCCCCAGC ACTTGGAGAA GATTGCCTAC CAGCAGAAGT
1201TGCTGCAGGA GGACCTTGTC CATATCCGAG CTGAGCTCTC CAGAGAGTCC ACTGAGATGG
1261AAAATGCTTG GAACGAATAC CTGAAGTTGG AGAATGATGT GGAACAGCTG AAGCAGACCC
1321TGCAGGAGCA ACACAGAAGA GCCTTTTTTT TCCAGGAGAA ATCGCAGATA CAGAAAGATC
1381TATGGAGAAT TGAAGATGTC ACTGCAGGCC TGAGTGCAAA TAAAGAGAAC TTCAGAATTC
1441TAGTGGAGTC AGTAAAAAAT CCGGAGAGAA AAACGGTGCC TTTGTTTCCT CACCCGCCTG
1501TGCCTTCACT CTCAACTTCT GAGAGCAAGC CGCCCCCACA GCCCAGTCCT CCCACCAGCC
1561CTGTGCGGAC CCCTCTGGAG GTTCGACTCT TCCCCCAGCT GCAAACCTAC GTGCCGTACC
1621GACCTCACCC ACCCCAGCTG AGGAAAGTGA CATCCCCCCT TCAGTCACCA ACTAAGGCGA
1681AGCCCAAAGT TCAGGAAGAT GAAGCACCTC CCAGGCCCCC ACTCCCCGAA CTCTACAGCC
1741CAGAGGACCA GCCCCCTGCT GTGCCGCCTC TGCCAAGAGA GGCCACCATC ATCCGGCACA
1801CATCTGTGCG GGGCCTCAAG CGGCAGTCAG ACGAGAGGAA GCGAGACCGG GAGCTGGGGC
1861AGTGTGTGAA TGGGGATTCC AGGGTGGAGC TGCGGTCGTA TGTCAGTGAG CCTGAGCTGG
1921CGACCCTCAG CGGGGACATG GCCCAGCCCT CCCTAGGACT TGTGGGCCCT GAGAGCAGGT
1981ACCAGACGCT GCCAGGCAGA GGGCTCTCAG GGTCCACGTC AAGGCTCCAG CAGTCGTCCA
2041CCATTGCTCC CTACGTCACA CTCCGGAGGG GTCTCAATGC CGAAAGCAGC AAGGCGACCT
2101TCCCTAGACC TAAGAGTGCC TTGGAGCGCC TGTACTCAGG GGATCACCAG CGAGGCAAGA
2161TGAGTGCAGA GGAGCAGCTG GAGCGCATGA AGCGACACCA GAAGGCCCTG GTCCGAGAGC
2221GCAAGAGGAC ACTGGGCCAA GGGGAGAGGA CGGGCCTGCC CTCATCTCGC TACCTCAGCC
2281GGCCGCTCCC TGGAGATCTT GGCTCAGTAT GTTTGCCAAC TTTCTTGTAC AAAGTTGGca
2341ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)

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