Construct: ORF ccsbBroadEn_14414
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017773.1_s300c1, BRDN0000394930
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TTC39B (158219)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 158219 | TTC39B | tetratricopeptide repeat do... | XM_011517732.2 | 94.4% | 94.3% | (many diffs) |
| 2 | human | 158219 | TTC39B | tetratricopeptide repeat do... | XM_017014311.1 | 94.4% | 94.3% | (many diffs) |
| 3 | human | 158219 | TTC39B | tetratricopeptide repeat do... | XM_017014312.1 | 94.4% | 94.3% | (many diffs) |
| 4 | human | 158219 | TTC39B | tetratricopeptide repeat do... | XM_024447422.1 | 94.4% | 94.3% | (many diffs) |
| 5 | human | 158219 | TTC39B | tetratricopeptide repeat do... | XM_024447423.1 | 94.4% | 94.3% | (many diffs) |
| 6 | human | 158219 | TTC39B | tetratricopeptide repeat do... | XM_024447424.1 | 94.4% | 94.3% | (many diffs) |
| 7 | human | 158219 | TTC39B | tetratricopeptide repeat do... | XM_017014310.1 | 93.9% | 90.3% | (many diffs) |
| 8 | human | 158219 | TTC39B | tetratricopeptide repeat do... | NM_001168339.1 | 90% | 90% | (many diffs) |
| 9 | human | 158219 | TTC39B | tetratricopeptide repeat do... | NM_152574.2 | 89.7% | 89.7% | (many diffs) |
| 10 | human | 158219 | TTC39B | tetratricopeptide repeat do... | NM_001168340.1 | 87.4% | 86.8% | (many diffs) |
| 11 | human | 158219 | TTC39B | tetratricopeptide repeat do... | NM_001168342.2 | 83.3% | 83.2% | (many diffs) |
| 12 | human | 158219 | TTC39B | tetratricopeptide repeat do... | XM_024447425.1 | 83.3% | 83.2% | (many diffs) |
| 13 | human | 158219 | TTC39B | tetratricopeptide repeat do... | NM_001168341.1 | 79.6% | 79.4% | (many diffs) |
| 14 | human | 158219 | TTC39B | tetratricopeptide repeat do... | XR_001746190.1 | 26.1% | (many diffs) | |
| 15 | mouse | 69863 | Ttc39b | tetratricopeptide repeat do... | NM_027238.2 | 83.8% | 87.3% | (many diffs) |
| 16 | mouse | 69863 | Ttc39b | tetratricopeptide repeat do... | XM_006538239.2 | 79.9% | 83.4% | (many diffs) |
| 17 | mouse | 69863 | Ttc39b | tetratricopeptide repeat do... | XM_011250101.2 | 79.7% | 80.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1911
- ORF length:
- 1842
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGCTCTTA GGTAGCCGAG CGGAGCTGGA AGCGGACGAG GACGTTTTCG 121 AAGATGCCTT GGAAACCATC TCAATATCTT CTCACTCAGA TATGGCAACA AGCAGCCTTC 181 ACTTTGCATC ATGTGATACA CAACAGGCGC CCAGACAGCG CGGAGCGTCT ACTGTCAGCA 241 GTTCATCATC AACCAAGGTG GATCTCAAGA GTGGCCTCGA AGAATGTGCT GTGGCATTGA 301 ACTTATTTCT AAGCAACAAA TTTACAGACG CCTTAGAATT GCTTCGCCCC TGGGCTAAGG 361 AGAGTATGTA CCATGCCTTG GGCTACAGTA CCATTGTGGT GTTGCAGGCT GTCCTGACAT 421 TCGAGCAACA GGACATCCAG AACGGCATTT CTGCCATGAA GGACGCTTTA CAAACCTGCC 481 AAAAGAAAAA ATACACAGTT GTAGAATCTT TCTCAAGTCT TCTTTCTAGA GGATCCCTGG 541 AGCAACTGAG TGAAGAGGAA ATGCATGCTG AAATCTGTTA TGCGGAGTGT CTCCTACAGA 601 AAGCTGCACT CACGTTTGTG CAGGATGAAA ATATGATCAA CTTCATCAAA GGTGGACTCA 661 AAATTAGAAC AAGTTACCAA ATATATAAAG AATGTCTTTC TATCCTGCAT GAAATTCAGA 721 AGAACAAACT TCAGCAGGAA TTCTTCTATG AGTTTGAAGG GGGTGTCAAG CTTGGCAGTG 781 GGGCCTTTAA TTTGATGCTG TCCCTTTTAC CAGCAAGGAT TATCAGACTA CTAGAATTTA 841 TTGGATTTTC TGGGAATAGG GAGTTGGGCC TCCTGCAGTT ACGTGAAGGT GCTTCAGGAA 901 GGAGCATGAG GTCTGCACTG TGCTGCTTAA CCATCTTAGC TTTTCATACT TACATCTCCC 961 TAATACTTGG TACAGGAGAA GTGAATGTTG CGGAAGCAGA GCGTCTCCTG GCACCCTTCC 1021 TCCAGCAGTT TCCAAATGGC TCACTCGTGT TGTTTTATCA TGCCCGAATA GAGTTGCTGA 1081 AAGGGAATCT TGAAGAGGCA CAAGAAGTAT TTCAAAAATG CGTTTCAGTT CAAGAAGAAT 1141 GGAAACAGTT TCACCATCTC TGCTACTGGG AGCTAATGTG GATTAATGTT TTCCAACAAA 1201 ACTGGATGCA GGCATATTAC TATTCAGATC TGCTTTGCAA AGAGAGTAAA TGGTCCAAGG 1261 CAACTTATGT GTTCTTGAAA GCAGCAATTT TGAGTATGCT TCCAGAGGAG GATGTAGTAG 1321 CAACGAATGA GAATGTGGTA ACTTTATTCA GACAGGTGGA CAGCTTGAAG CAGAGAATTG 1381 CCGGGAAATC TATCCCTACT GAGAAGTTTG CTGTGAGGAA GGCTCGGCGT TACTCCGCCT 1441 CCTTACCTGC ACCTGTGAAG CTCATCTTAC CTGCCCTGGA AATGATGTAT GTCTGGAATG 1501 GTTTTTCAAT AGTGAGCAAA AGAAAAGACC TTTCTGAAAA TCTGTTAGTA ACTGTTGAAA 1561 AAGCTGAGGC AGCTTTACAA AGTCAAAATT TTAACAGCTT CTCTGTGGAT GATGAGTGCT 1621 TAGTGAAGTT ACTTAAAGGA TGTTGCCTCA AGAACTTACA GCGGCCCTTG CAAGCTGAAC 1681 TATGTTACAA TCATGTTGTG GAAAGTGAAA AGCTACTGAA GTATGACCAC TACCTAGTGC 1741 CGTTCACTCT ATTTGAATTG GCATCTTTGT ATAAAAGCCA GGGGGAAATT GACAAGGCCA 1801 TAAAGTTCCT AGAAACTGCA AGGAACAACT ACAAAGATTA CTCCCTGGAG TCCAGACTAC 1861 ACCTCAGAAT TCAGGCAGCT CTTCACCTCT GGAGAAAACC TTCCTCAGAT TTGCCAACTT 1921 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac