Construct: ORF ccsbBroadEn_14592

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014294.1_s300c1, BRDN0000393656
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COL9A3 (1299)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1299 COL9A3 collagen type IX alpha 3 chain NM_001853.4 99.6% 99.5% (many diffs)
2 human 1299 COL9A3 collagen type IX alpha 3 chain XM_011528545.1 79% 78.2% (many diffs)
3 human 1299 COL9A3 collagen type IX alpha 3 chain XM_017027666.1 69.3% 68.3% (many diffs)
4 mouse 12841 Col9a3 collagen, type IX, alpha 3 NM_009936.2 83.2% 90.7% (many diffs)
5 mouse 12841 Col9a3 collagen, type IX, alpha 3 XM_006500553.3 78.7% 85.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2118
ORF length:
2052
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CGGGCCAAGC Gcgtgcgccc cgctcctgct cctgctcctg ctcggggagc
121ttctggcggc cgccggggcg cagagagtgg gactccccgg cccccccggc cccccagggc
181cgcccgggaa gcccggccag gacggcattg acggagaagc tggtcctcca ggtctgcctg
241ggcccccggg accaaagggg gccccaggaa agccggggaa accaggagag gctgggctgc
301cgggactgcc gggtgtggat ggtctgactg gacgagatgg accccctgga cccaagggtg
361cccctgggga acggggaagt ctgggacccc cggggccgcc cgggctgggg ggcaaaggcc
421tccctggacc ccccggagag gcaggagtga gcggcccccc aggtgggatc ggcctccgcg
481gccccccggg accttctgga ctccccggcc tccctggtcc cccaggacct cccggacccc
541ctggacaccc aggagtcctc cctgaaggcg ctactgacct tcagtgccca agtatctgcc
601cgccaggtcc cccagggccc cctggaatgc cagggttcaa gggacccact ggctacaaag
661gcgagcaggg ggaagtcggc aaggacggcg agaagggtga ccctggcccc cctgggcccg
721ccggcctccc gggcagcgtg gggctgcagg gcccccgggg attacgagga ctgccagggc
781cactcgggcc ccctggggac cggggtccca ttgggttccg agggccgcct gggatcccag
841gagcgcctgg gaaagcgggt gaccgaggcg agaggggccc agaagggttc cgcggcccca
901agggtgacct cggcagacct ggtcccaagg gaaccccTGG CATGGCCGGG CCAAGCGGAG
961AGCCGGGCAT GCCGGGCAAG GACGGCCAGA ATGGCGTGCC AGGACTCGAT GGCCAGAAGG
1021GAGAGGCTGG TCGCAACGGT GCTCCGGGAG AGAAGGGCCC CAACGGGCTG CCGGGCCTCC
1081CTGGACGAGC GGGGTCCAAA GGCGAGAAGG GAGAACGGGG CAGAGCTGGG GAGCTGGGTG
1141AGGCCGGCCC CTCTGGAGAG CCAGGCGTCC CTGGAGATGC TGGCATGCCT GGGGAGCGCG
1201GTGAGGCTGG CCACCGGGGC TCAGCGGGGG CCCTCGGCCC ACAAGGCCCT CCCGGAGCCC
1261CTGGTGTCCG AGGCTTCCAG GGCCAGAAGG GCAGCATGGG AGACCCCGGC CTTCCAGGCC
1321CCCAGGGCCT CCGAGGTGAC GTGGGCGACC GGGGTCCGGG AGGTGCCGCA GGCCCTAAGG
1381GAGACCAGGG TATTGCAGGT TCCGACGGTC TTCCTGGGGA TAAAGGAGAA CTGGGTCCCA
1441GCGGCCTGGT CGGACCCAAA GGAGAGTCTG GCAGTCGAGG GGAGCTGGGC CCCAAAGGCA
1501CCCAGGGTCC CAACGGCACC AGCGGTGTTC AGGGTGTCCC CGGGCCCCCC GGTCCTCTGG
1561GCCTGCAGGG CGTCCCGGGT GTTCCTGGCA TCACGGGGAA GCCGGGAGTT CCGGGGAAGG
1621AGGCCAGCGA GCAGCGCATC AGGGAGCTGT GTGGGGGGAT GATCAGCGAA CAAATTGCAC
1681AGTTAGCCGC GCACCTAAGG AAGCCTTTGG CACCCGGGTC CATTGGTCGG CCCGGTCCAG
1741CTGGCCCCCC TGGGCCCCCA GGACCCCCAG GCTCCATTGG TCACCCTGGC GCTCGAGGAC
1801CCCCCGGATA CCGCGGTCCC ACTGGGGAGC TGGGAGACCC CGGGCCCAGA GGAAACCAGG
1861GTGACAGAGG AGACAAAGGC GCGGCAGGAG CAGGGCTGGA CGGGCCTGAA GGAGACCAGG
1921GGCCCCAAGG ACCCCAAGGC GTGCCCGGCA CCAGCAAGGA CGGCCAGGAC GGTGCTCCCG
1981GCGAGCCTGG GCCTCCCGGA GATCCTGGGC TTCCAGGTGC CATTGGGGCC CAGGGGACAC
2041CGGGGATCTG CGACACCTCA GTCTGCCAAG GAGCCGTGTT AGGAGGGGTC GGGGAGAAAT
2101CAGGCTCTCG AAGCTCATAC CCAACTATCT TGTACAAAGT tggcattata agaaagcatt
2161gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)