Construct: ORF ccsbBroadEn_14599
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018791.1_s300c1, BRDN0000458087
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CSNK1A1 (1452)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001892.6 | 99% | 22.5% | (many diffs) |
| 2 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001271741.2 | 94.8% | 23.3% | (many diffs) |
| 3 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001025105.3 | 91.4% | 20.8% | (many diffs) |
| 4 | human | 122011 | CSNK1A1L | casein kinase 1 alpha 1 like | NM_145203.6 | 90.4% | 18.6% | (many diffs) |
| 5 | human | 1452 | CSNK1A1 | casein kinase 1 alpha 1 | NM_001271742.2 | 67.4% | 6% | (many diffs) |
| 6 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526388.2 | 93.9% | 22.5% | (many diffs) |
| 7 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | NM_146087.2 | 89.8% | 23.3% | (many diffs) |
| 8 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526384.2 | 86.8% | 20.8% | (many diffs) |
| 9 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526385.2 | 86.5% | 20.8% | (many diffs) |
| 10 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_011247048.2 | 84.6% | 20.3% | (many diffs) |
| 11 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526383.3 | 84.5% | 20.3% | (many diffs) |
| 12 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526386.3 | 84.1% | 20.9% | (many diffs) |
| 13 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XM_006526387.2 | 83% | 21.5% | (many diffs) |
| 14 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XR_386023.3 | 13.7% | (many diffs) | |
| 15 | mouse | 93687 | Csnk1a1 | casein kinase 1, alpha 1 | XR_386022.3 | 13.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 97
- ORF end:
- 361
- ORF length:
- 264
- Sequence:
-
1 TTGATTTTAT TTTGACTGAT AGTGACCTGT TCGTTGCAAC AAATTGATGA GCAATGCTTT 61 TTTATAATGC CAACTTTGTA CAAAAAAGTT GGCACCATGG CGAGTAGCAG CGGCTCCAAG 121 GCTGAATTCA TTGTCGGAGG GAAATATAAA CTGGTACGGA AGATCGGGTC TGGCTCCTTC 181 GGGGACATCT ATTTGGCGAT CAACATCACC AACGGCGAGG AAGTGGCAGT GAAGCTAGAA 241 TCTCAGAAGG CCAGGCATCC CCAGTTGCTG TACGAGAGCA AGCTCTATAA GATTCTTCAA 301 GGTGGGGTTG GCATCCCCCA CCANTANNGT GGTATGGTCA GGAAAAAGAC TACAATGTAC 361 TAGTCATGGA TCTTCTGGGA CCTAGCCTCG AAGACCTCTT CAATTTCTGT TCAAGAAGGT 421 TCACAATGAA AACTGTACTT ATGTTAGCTG ACCAGATGAT CAGTAGAATT GAATATGTGC 481 ATACAAAGAA TTTTATACAC AGAGACATTA AACCCAGATA ACTTCCTAAT GGGTATTGGG 541 CGTCACTGTA ATAAGTTATT CCTTATTGAT TTTGGTTTGG CCAAAAAGTA CAGAGACAAC 601 AGGACAAGGC AACACATACC ATACAGAGAA GATAAAAACC TCACTGGCAC TGCCCGATAT 661 GCTAGCATCA ATGCACATCT TGGTATTGAG CAGAGTCGCC GAGATGACAT GGAATCATTA 721 GGATATGTTT TGATGTATTT TAATAGAACC AGCCTGCCAT GGCAAGGGCT AAAGGCTGCA 781 ACAAAGAAAN NAAAATATGA AAAGATTAGT GAAAAGAAGA TGTCCACGCC TGTTGAAGTT 841 TTATGTAAGG GGTTTCCTGC AGAATTTGCG ATGTACTTAA ACTATTGTCG TGGGCTACGC 901 TTTGAGGAAG CCCCAGATTA CATGTATTCT GAGGCAGCTA NTCCGCATTC TTTTCAGGAC 961 CCTGAACCAT CAATATGACT ACACATTTGA TTGGACAATG TTAAAGCAGA AAGCAGCACA 1021 GCAGGCAGCC TCTTCCAGTG GGCAGGGTCA GCAGGCCCAA ACCCCCACAG GCAAGCAAAC 1081 TGACAAAACC AAGAGTAACA TGAAAGGTTT CTTGCCAACT TTCTTGTACA AAGTTGGCAT 1141 TATAAGAAAG CATTGCTTAT CAATTTGTTG CAACGAACAG GTCACTATCA GTCAAAATAA 1201 AATCATTATT GCCATCCAGC TCTGCACTG