Construct: ORF ccsbBroadEn_14702
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018867.1_s300c1, BRDN0000458163
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- MPP3 (4356)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4356 | MPP3 | membrane palmitoylated prot... | NM_001932.5 | 97.3% | 50.5% | (many diffs) |
| 2 | human | 4356 | MPP3 | membrane palmitoylated prot... | XM_006721915.2 | 97.3% | 50.5% | (many diffs) |
| 3 | human | 4356 | MPP3 | membrane palmitoylated prot... | NM_001353080.1 | 96% | 49.8% | (many diffs) |
| 4 | human | 4356 | MPP3 | membrane palmitoylated prot... | NM_001330233.1 | 93.4% | 48.4% | (many diffs) |
| 5 | human | 4356 | MPP3 | membrane palmitoylated prot... | XR_001752516.1 | 75.6% | (many diffs) | |
| 6 | human | 4356 | MPP3 | membrane palmitoylated prot... | XR_002958011.1 | 75.5% | (many diffs) | |
| 7 | human | 4356 | MPP3 | membrane palmitoylated prot... | XR_001752517.2 | 71.5% | (many diffs) | |
| 8 | human | 4356 | MPP3 | membrane palmitoylated prot... | XR_934466.2 | 71.4% | (many diffs) | |
| 9 | human | 4356 | MPP3 | membrane palmitoylated prot... | XR_001752512.2 | 71.2% | (many diffs) | |
| 10 | human | 4356 | MPP3 | membrane palmitoylated prot... | XM_017024656.1 | 62.9% | 16.3% | (many diffs) |
| 11 | human | 4356 | MPP3 | membrane palmitoylated prot... | NR_003562.3 | 60% | (many diffs) | |
| 12 | human | 4356 | MPP3 | membrane palmitoylated prot... | XM_017024657.2 | 58.2% | 11.7% | (many diffs) |
| 13 | human | 4356 | MPP3 | membrane palmitoylated prot... | XR_001752515.1 | 57.6% | (many diffs) | |
| 14 | human | 4356 | MPP3 | membrane palmitoylated prot... | NR_148343.1 | 57.6% | (many diffs) | |
| 15 | human | 4356 | MPP3 | membrane palmitoylated prot... | NR_148342.1 | 54.6% | (many diffs) | |
| 16 | human | 4356 | MPP3 | membrane palmitoylated prot... | NR_148345.1 | 53.7% | (many diffs) | |
| 17 | human | 4356 | MPP3 | membrane palmitoylated prot... | NR_148344.1 | 53% | (many diffs) | |
| 18 | human | 4356 | MPP3 | membrane palmitoylated prot... | XM_017024658.1 | 51.7% | 77% | (many diffs) |
| 19 | human | 4356 | MPP3 | membrane palmitoylated prot... | XM_017024659.1 | 48.5% | 71.7% | (many diffs) |
| 20 | human | 4356 | MPP3 | membrane palmitoylated prot... | XM_006721916.3 | 48.5% | 59.4% | (many diffs) |
| 21 | human | 4356 | MPP3 | membrane palmitoylated prot... | XM_017024655.1 | 48.2% | 59.2% | (many diffs) |
| 22 | human | 4356 | MPP3 | membrane palmitoylated prot... | XM_017024660.1 | 35.3% | 56% | (many diffs) |
| 23 | mouse | 13384 | Mpp3 | membrane protein, palmitoyl... | NM_007863.2 | 85.1% | 48.6% | (many diffs) |
| 24 | mouse | 13384 | Mpp3 | membrane protein, palmitoyl... | XM_006532138.3 | 85.1% | 48.6% | (many diffs) |
| 25 | mouse | 13384 | Mpp3 | membrane protein, palmitoyl... | XM_006532139.3 | 74.8% | 37.3% | (many diffs) |
| 26 | mouse | 13384 | Mpp3 | membrane protein, palmitoyl... | XM_006532140.3 | 47.8% | 79.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 99
- ORF end:
- 1122
- ORF length:
- 1023
- Sequence:
-
1 ATCGGATTTT ATTTTGACTG ATAGTGACCT GTTCGTTGCA ACAAATTGAT GAGCAATGCT 61 TTTTTATAAT GCCAACTTTG TACAAAAAAG TTGGCACCAT GCCAGTGCTA TCGGAGGACT 121 CTGGTTTGCA TGAAACCCTG GCCCTGCTGA CCTCCCAGCT CAGACCTGAC TCCAACCACA 181 AGGAGGAGAT GGGCTTCCTG AGGGATGTTT TCAGTGAAAA AAGCCTCAGT TACTTAATGA 241 AGATTCATGA GAAGCTTCGC TATTATGAAA GGCAAAGTCC AACCCCAGTT CTGCACAGCG 301 CTGTGGCCCT CGCTGAGGAC GTGATGGAGG AGTTGCAGGC CGCCTCCGTG CACAGTGATG 361 AGAGGGAGCT GCTCCAGCTG CTGTCCACCC CGCACCTGAG GGCTGTGCTC ATGGTACATG 421 ACACGGTTGC CCAGAAGAAT TTTGACCCCG TTCTCCCGCC TCTGCCTGAC AATATCGATG 481 AGGATTTTGA TGAGGAATCG GTGAAGATCG TCCGCTTGGT GAAGAACAAG GAACCCCTGG 541 GTGCCACCAT CCGGCGGGAC GAGCACTCAG GGGCTGTTGT GGTGGCCAGG ATCATGCGAG 601 GAGGCGCAGC AGACAGGAGC GGCCTGGTCC ACGTTGGAGA TGAGCTCCGA GAAGTGAACG 661 GGATCGCAGT CCTGCACAAG CGGCCCGACG AGATCAGCCA GATTCTGGCC CAGTCCCAGG 721 GATCCATCAC CCTAAAAATC ATCCCAGCCA CCCAGGAGGA AGATCGCTTA AAGGAGAGCA 781 AGGTGTTCAT GCGCGCCCTC TTCACTACAA CCCTCGGAGG ACCGGGCCAT CCCTTGCCAG 841 GAGGCGGGCC TGCCCTTCCA GCGCAGCAGG TCCTGGGAGG TGGTGGAGCC AGGACGACCC 901 CCACGTTGTT Gcaggccaag cgagtcgggg acaccaacct tcgagccggc ctcatcccct 961 ccaaggggtt ccaggagaga cgactaagct accggagagc cgcgggcacc ctgccgagcc 1021 cccagagcct caggaagCCC CCCTTAGAGC TTGTGACTGT GAGGCTAACC TCAAAAGGCC 1081 ACTATGTGGC TGTTCGTCGG AAGAGCTTCC CGACTGGGCT GTAGGGAGAG ACTGGGTGGC 1141 TCGCAGACAG TAAAGATGTC TTCAGGAGCT GAGTCTCCCT AGCTGCTGAC TTACGTAGAG 1201 GTGGCCAGGT ACCAACACCA GCCCGGAGAG CGGCCCCGCC TGGTGGTTCT GATCGGGTCT 1261 CTGGGAGCCC GACTGCACGA GCTGAAGCAA AAGGTGGTGG CTGAGAACCC ACAGCACTTT 1321 GGCGTCGCTG TTCCACATAC CACCAGGCCC CGAAAGAGCC ATGAGAAGGA AGGAGTGGAA 1381 TATCACTTTG TGTCTAAGCA AGCATTTGAG GCCGACTTAC ATCACAACAA GTTCCTGGAA 1441 CATGGTGAAT ATAAGGAAAA TCTGTATGGA ACCAGCCTGG AGGCCATTCA GGCTGTTATG 1501 GCCAAAAACA AAGTTTGTTT GGTGGATGTG GAGCCAGAAG CACTGAAACA ACTGAGGACC 1561 TCAGAATTTA AACCCTATAT TATATTTGTA AAGCCTGCAA TTCAGGAAAA AAGAAAAACG 1621 CCACCTATGT CCCCAGCTTG TGAGGACACA GCAGCCCCAT TTGATGAGCA GCAGCAAGAG 1681 ATGGCCGCTT CTGCCGCCTT CATAGACCGG CATTACGGGC ACCTGGTAGA CGCCGTGCTG 1741 GTGAAGGAGG ATCTCCAGGG TGCCTACAGC CAGCTCAAAG TGGTCTTAGA GAAGCTGAGC 1801 AAGGACACTC ACTGGGTACC TGTTAGTTGG GTCAGGTTGC CAACTTTCTT GTACAAAGTT 1861 GGCATTATAA GAAAGCATTG CTTATCAATT TGTTGCAACG AACAGGTCAC TATCAGTCAA 1921 AATAAAATCA TTATTGCCAT CCCAGCCTGA TTT