Construct: ORF ccsbBroadEn_14718
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018915.1_s300c1, BRDN0000458211
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- NPR2 (4882)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4882 | NPR2 | natriuretic peptide receptor 2 | NM_003995.3 | 93.7% | 19.6% | (many diffs) |
| 2 | human | 4882 | NPR2 | natriuretic peptide receptor 2 | XM_005251478.3 | 93.4% | 19.6% | (many diffs) |
| 3 | human | 4882 | NPR2 | natriuretic peptide receptor 2 | XM_024447557.1 | 89.2% | 18.7% | (many diffs) |
| 4 | human | 4882 | NPR2 | natriuretic peptide receptor 2 | XM_024447556.1 | 88.9% | 18.7% | (many diffs) |
| 5 | human | 4882 | NPR2 | natriuretic peptide receptor 2 | XM_024447558.1 | 59.4% | 3.5% | (many diffs) |
| 6 | human | 4882 | NPR2 | natriuretic peptide receptor 2 | XM_024447561.1 | 49.3% | 4.5% | (many diffs) |
| 7 | human | 4882 | NPR2 | natriuretic peptide receptor 2 | XM_024447560.1 | 46.9% | 4.2% | (many diffs) |
| 8 | human | 4882 | NPR2 | natriuretic peptide receptor 2 | XM_024447559.1 | 46.8% | 4.2% | (many diffs) |
| 9 | mouse | 230103 | Npr2 | natriuretic peptide receptor 2 | NM_173788.4 | 86.7% | 19.2% | (many diffs) |
| 10 | mouse | 230103 | Npr2 | natriuretic peptide receptor 2 | NM_001355466.1 | 84.3% | 19.6% | (many diffs) |
| 11 | mouse | 230103 | Npr2 | natriuretic peptide receptor 2 | XR_390318.4 | 41.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 797
- ORF length:
- 699
- Sequence:
-
1 GATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG GCGCTGCCAT CACTTCTGCT 121 GTTGGTGGCA GCCCTGGCAG GTGGGGTGCG TCCTCCCGGG GCGCGGAACC TGACGCTGGC 181 GGTGGTGCTG CCAGAACACA ACCTGAGCTA TGCCTGGGCC TGGCCACGGG TGGGACCCGC 241 TGTGGCACTA GCTGTGGAGG CTCTGGGCCG GGCACTGCCC GTGGACCTGC GGTTTGTCAG 301 CTCCGAACTG GAAGGCGCCT GCTCTGAGTA CCTGGCACCG CTGAGCGCTG TGGACCTCAA 361 GCTGTACCAT GACCCCGACC TGCTGTTAGG TCCCGGTTGC GTGTACCCTG CTGCCTCTGT 421 GGCCCGCTTT GCCTCCCACT GGCGCCTTCC CCTGCTGACT GCGGGTGCTG TGGCCTCTGG 481 TTTTTCGGCT AAGAATGACC ATTATCGTAC CCTGGTTCGC ACTGGCCCCT CTGCTCCCAA 541 GCTGGGTGAG TTTGTGGTGA CACTACACGG GCACTTCAAT TGGACTGCCC GTGCTGCCTT 601 GCTGTACCTG GATGCTCGCA CAGATGACCG GCCTCACTAC TTCACCATCG AGGGCGTCTT 661 TGAGGCCCTG CAGGGCAGCA ACCTCAGTGT GCAGCACCAG TGTATGCCCG AGAGCCAGGG 721 GCCCCGAGCA GGCCACCCAC TTCATCCGGG CCAACGGGCG CATTGTGTAT ATCTGCGGCC 781 CTCTGGAGAT GCTGCATGAG ATCCTGCTTC AGCCCAGAGG GAGAATCTGA CCAATGGGGA 841 TTATGTTCTT CTTTTACCTG GATGTCTTTG GGGAGAGTCT CCGTGCAGGC CCCACCACGT 901 GCTAACAGGC CGGCCCtggc aggacaatcg cacccgggaa caggcccagg ccctcagaga 961 ggcctttcag actgtattgg tgatcacgta ccgagaaccc ccaaatcctg agtatcagga 1021 attccagaat cgtctgctga taagagcccg ggaagacttt ggtgtggagc tgggcccttc 1081 cctgatgaac ctcatcgctg gctgcttcta tgatgggatc ctgctatatg ctgaagtcct 1141 gaatgagaca atacaggaag gaggcacccg ggaggatgga cttcgaattg tggaaaagat 1201 gcagggacga agatatcacg gtgtaactgg gctggttgtc atggacaaga acaatgaccg 1261 agagactgac tttgtcctct gggccatggg agacctggat tctggggact ttcagcctgc 1321 agcccactac tcgggagctg agaagcagat ttggtggacg ggacggccta ttccctgggt 1381 gaagggggct cctccctcgg acaatccccc ctgtgccttt gacttggacg acccatcctg 1441 tgataaaact ccactttcaa ccctggcaat tgtggctctg ggcacaggaa tcaccttcat 1501 catgtttggt gtttccagct tcctaatttt ccgaaagctg atgctggaga aggagctggc 1561 tagcatgttg tggcgtattc gctgggaaga actgcagttt ggcaactcag agcgttatca 1621 caaaggtgca ggcagtcgcc tcacactgtc gctgcgggga tccagttacg gctcgctcat 1681 gacagcccat gggaaatacc agatctttgc caacaccggt cacttcaagg gaaatgttgt 1741 cgccatcaaa catgtgaata agaagcgcat tgagctgacc cggcaggttc tgtttgaact 1801 caaacatatg agagatgttc agttcaacca tctcactcgc ttcattggcg cctgcataga 1861 ccctcccaac atttgcattg tcactgaata ctgtcctcgt gggagtttac aggatattct 1921 agaaaatgac agcatcaact tggactggat gtttcgttat tcactcatta atgaccttgt 1981 taagggcatg gcctttctcc acaacagcat tatttcatcg catgggagtc tcaagtcctc 2041 caactgtgtg gtggatagtc gttttgtgct caaaatcaca gactatggcc tggccagctt 2101 ccgatcaact gctgaacctg atgacagcca tgccctctat gccaagaagc tgtggactgc 2161 cccagaactg ctcagtggga accccttgcc aaccacaggc atgcagaagg ctgacgtcta 2221 tagctttggg atcatcctgc aggagatagc acttcgcagt ggtcctttct acttggaggg 2281 cctggacctc agccccaaag aGATGTTCCA GAAGGTACGC AAATGGTCAG CGGTCCCTAT 2341 TTCCGGGGCA AGCATCGACC GGACCCAACC TCATGGAAGA GCATGTTCTG TGATCGAGTC 2401 GATGTTAGAC TCAGACCGCA GATGAGCGAC CAGACTTTGG ACAGATTAAG CGCTTCATTC 2461 GGCGTCTGAA CTAGCAGGTT GGCACCCGCA TAGTGGACAA CCTCCTGCTG CGCATGGAAC 2521 AGTATCCCAA TAACTCGGAG AAGATGGTGG AGGTACGCAC ACAGGCCTAT CTGGAGGAAA 2581 CACGCAAGGC TGAAGCTCTC CTCTACCAAC TCCTACCCCA TTCAGTGGCA GAGCAGTTAA 2641 CACGGGGAGA GACTGTACAG GCTGAGGCCT TTGACACTGT TACCATCTAC TTCAGTGACA 2701 TTGTCTGGCT TCACAGCATC GTCAGCAGAG AGCACCCCCA TGCAGGTACT GACACTTCTT 2761 AATGACCTGT ATACCTCCTT TGATGCCATA ATTGACAACT TTGATGTCTA CAAGTCTCCA 2821 CCTTTCCCAG ACTCTCCCAA CCTGTTTCTT CTCAAAGGGC CAGTCTGTGC TGGGGTTGTT 2881 GGCCTGAAGA TGCCCCGTTA TTGTCTTTTT GGAGACACAG TGAACACTGC TTCTCGAATG 2941 GAGTCTAATG GTCAAGCGCT GAAGATCCAT GTCTCCTCTA CCACCAAGGA TGCCCTAGAT 3001 GAGCTAGGAT GCTTCCAGCT AGAGCTTCGG GGGGATGTGG AAATGAAGGG AAAAGGAAAG 3061 ATGCGAACAT ACTGGCTCTT AGGAGAGCGG AAAGGACCTC CTGGACTCCT GTTGCCAACT 3121 TTCTTGTACA AAGTTGGCAT TATAAGAAAG CATTGCTTAT CAATTTGTTG CAACGAACAG 3181 GTCACTATCA GTCAAAATAA AATCATTATT GCCATCCCAG CTTGATTT