Construct: ORF ccsbBroadEn_14910
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018877.1_s300c1, BRDN0000458173
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- RIPK1 (8737)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8737 | RIPK1 | receptor interacting serine... | NM_001354930.2 | 99.6% | 37% | (many diffs) |
| 2 | human | 8737 | RIPK1 | receptor interacting serine... | NM_003804.6 | 99.6% | 37% | (many diffs) |
| 3 | human | 8737 | RIPK1 | receptor interacting serine... | NM_001354931.2 | 92.7% | 30.3% | (many diffs) |
| 4 | human | 8737 | RIPK1 | receptor interacting serine... | NM_001317061.3 | 75.4% | 13.1% | (many diffs) |
| 5 | human | 8737 | RIPK1 | receptor interacting serine... | NM_001354932.2 | 75.4% | 13.1% | (many diffs) |
| 6 | human | 8737 | RIPK1 | receptor interacting serine... | NM_001354933.2 | 75.4% | 13.1% | (many diffs) |
| 7 | human | 8737 | RIPK1 | receptor interacting serine... | NM_001354934.2 | 75.4% | 13.1% | (many diffs) |
| 8 | human | 8737 | RIPK1 | receptor interacting serine... | XM_017011403.1 | 75.4% | 13.1% | (many diffs) |
| 9 | human | 8737 | RIPK1 | receptor interacting serine... | XM_017011404.2 | 56.1% | 1.6% | (many diffs) |
| 10 | human | 8737 | RIPK1 | receptor interacting serine... | XM_006715237.3 | 50% | 68.9% | (many diffs) |
| 11 | human | 8737 | RIPK1 | receptor interacting serine... | XM_017011405.1 | 50% | 68.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 96
- ORF end:
- 936
- ORF length:
- 840
- Sequence:
-
1 AGATTTTATT TTGACTGATA GTGACCTGTT CGTTGCAACA AATTGATGAG CAATGCTTTT 61 TTATAATGCC AACTTTGTAC AAAAAAGTTG GCACCATGCA ACCAGACATG TCCTTGAATG 121 TCATTAAGAT GAAATCCAGT GACTTCCTGG AGAGTGCAGA ACTGGACAGC GGAGGCTTCG 181 GGAAGGTGTC TCTGTGTTTC CACAGAACCC AGGGACTCAT GATCATGAAA ACAGTGTACA 241 AGGGGCCCAA CTGCATTGAG CACAACGAGG CCCTCTTGGA GGAGGCGAAG ATGATGAACA 301 GACTGAGACA CAGCCGGGTG GTGAAGCTCC TGGGCGTCAT CATAGAGGAA GGGAAGTACT 361 CCCTGGTGAT GGAGTACATG GAGAAGGGCA ACCTGATGCA CGTGCTGAAA GCCGAGATGA 421 GTACTCCGCT TTCTGTAAAA GGAAGGATAA TTTTGGAAAT CATTGAAGGA ATGTGCTACT 481 TACATGGAAA AGGCGTGATA CACAAGGACC TGAAGCCTGA AAATATCCTT GTTGATAATG 541 ACTTCCACAT TAAGATCGCA GACCTCGGCC TTGCCTCCTT TAAGATGTGG AGCAAACTGA 601 ATAATGAAGA GCACAATGAG CTGAGGGAAG TGGACGGCAC CGCTAAGAAG AATGGCGGCA 661 CCCTCTACTA CATGGCGCCC GAGCACCTGA ATGACGTCAA CGCAAAGCCC ACAGAGAAGT 721 CGGATGTGTA CAGCTTTGCT GTAGTACTCT GGGCGATATT TGCAAATAAG GAGCCATATG 781 AAAATGCTAT CTGTGAGCAG CAGTTGATAA TGTGCATAAA ATCTGGGAAC AGGCCAGATG 841 TGATGACATC ACTGAGTACT GCCCAGAGAA ATTATCAGTC TCATGAAGCT CTGCTGGGAA 901 GCGAATCCGG AAGCTCGGCC GACATTTcct ggcattgaag aaaaatttag gcctttttat 961 ttaagtcaat tagaagaaag tgtagaagag gacgtgaaga gtttaaagaa agagtattca 1021 aacgaaaatg cagttgtgaa gagaatgcag tctcttcaac ttgattgtgt ggcagtacct 1081 tcaagccggt caaattcagc cacagaacag cctggttcac tgcacagttc ccagggactt 1141 gggatgggtc ctgtggagga gtcctggttt gctccttccc tggagcaccc acaagaagag 1201 aatgagccca gcctgcagag taaactccaa gacgaagcca actaccatct ttatggcagc 1261 cgcatggaca ggcagacgaa acagcaGCCC AGACAGAATT GGGCTACAAC AGAGAGGAGG 1321 AAAGGAGACG CAGGGTCTCC CATGACCTTT TTGCACAGCA AAGACCTTAC GAGAATTTTC 1381 AGAATACAGA GGGAAAAGGC ACTGCTTATT CCAGTGCAGC CAGTCATGGT AATGCAGTGC 1441 ACCAGCCCTC AGGGCTCACC AGCCAACCTC AAGTACTGTA TCAGAACAAT GGATTATATA 1501 GCTCACATGG CTTTGGAACA AGACCACTGG ATCCAGGAAC AGCAGGTCCC AGAGTTTGGT 1561 ACAGGCCAAT TCCAAGTCAT ATGCCTAGTC TGCATAATAT CCCAGTGCCT GAGACCAACT 1621 ATCTAGGAAA TACACCCACC ATGCCATTCA GCTCCTTGCC ACCAACAGAT GAATCTATAA 1681 AATATACCAT ATACAATAGT ACTGGCATTC AGATTGGAGC CTACAATTAT ATGGAGATTG 1741 GTGGGACGAG TTCATCACTA CTAGACAGCA CAAATACGAA CTTCAAAGAA GAGCCAGCTG 1801 CTAAGTACCA AGCTATCTTT GATAATACCA CTAGTCTGAC GGATAAACAC CTGGACCCAA 1861 TCAGGGAAAA TCTGGGAAAG CACTGGAAAA ACTGTGCCCG TAAACTGGGC TTCACACAGT 1921 CTCAGATTGA TGAAATTGAC CATGACTATG AGCGAGATGG ACTGAAAGAA AAGGTTTACC 1981 AGATGCTCCA AAAGTGGGTG ATGAGGGAAG GCATAAAGGG AGCCACGGTG GGGAAGCTGG 2041 CCCAGGCGCT CCACCAGTGT TCCAGGATCG ACCTTCTGAG CAGCTTGATT TACGTCAGCC 2101 AGAACTTGCC AACTTTCTTG TACAAAGTTG GCATTATAAG AAAGCATTGC TTATCAATTT 2161 GTTGCAACGA ACAGGTCACT ATCAGTCAAA ATAAAATCAT TATTGCCATC CCAGCTGAAT 2221 AT