Construct: ORF ccsbBroadEn_14915
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018878.1_s300c1, BRDN0000458174
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- KSR1 (8844)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8844 | KSR1 | kinase suppressor of ras 1 | NM_014238.2 | 98.7% | 61.8% | (many diffs) |
| 2 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_017025271.1 | 95.7% | 59.9% | (many diffs) |
| 3 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_017025272.1 | 95.7% | 59.9% | (many diffs) |
| 4 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_017025273.1 | 95.7% | 59.9% | (many diffs) |
| 5 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_017025274.2 | 95.7% | 59.9% | (many diffs) |
| 6 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_017025275.2 | 95.7% | 59.9% | (many diffs) |
| 7 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_017025276.1 | 95.7% | 59.9% | (many diffs) |
| 8 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_017025270.2 | 93.5% | 58.5% | (many diffs) |
| 9 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_011525430.2 | 83.7% | 52.3% | (many diffs) |
| 10 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_011525431.2 | 83.5% | 52.4% | (many diffs) |
| 11 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_011525429.2 | 81.5% | 51% | (many diffs) |
| 12 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_017025267.1 | 80% | 49.5% | (many diffs) |
| 13 | human | 8844 | KSR1 | kinase suppressor of ras 1 | NM_001367810.1 | 79.1% | 48.5% | (many diffs) |
| 14 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_006722154.3 | 77.6% | 47% | (many diffs) |
| 15 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XR_934587.3 | 72.3% | (many diffs) | |
| 16 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_017025277.1 | 72.2% | 35.8% | (many diffs) |
| 17 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_017025278.1 | 70.4% | 34.7% | (many diffs) |
| 18 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XR_934588.3 | 70.3% | (many diffs) | |
| 19 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_017025279.1 | 42.8% | 49.7% | (many diffs) |
| 20 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XM_017025280.2 | 40.8% | 48.7% | (many diffs) |
| 21 | human | 8844 | KSR1 | kinase suppressor of ras 1 | XR_002958082.1 | 34.5% | (many diffs) | |
| 22 | mouse | 16706 | Ksr1 | kinase suppressor of ras 1 | XM_011248772.2 | 77.5% | 48.1% | (many diffs) |
| 23 | mouse | 16706 | Ksr1 | kinase suppressor of ras 1 | XM_011248775.2 | 77.5% | 48.1% | (many diffs) |
| 24 | mouse | 16706 | Ksr1 | kinase suppressor of ras 1 | XM_011248774.3 | 75.5% | 46.9% | (many diffs) |
| 25 | mouse | 16706 | Ksr1 | kinase suppressor of ras 1 | XM_011248773.3 | 72.7% | 45.2% | (many diffs) |
| 26 | mouse | 16706 | Ksr1 | kinase suppressor of ras 1 | NM_001348207.1 | 71.2% | 43.5% | (many diffs) |
| 27 | mouse | 16706 | Ksr1 | kinase suppressor of ras 1 | XM_006532335.4 | 70.3% | 43.6% | (many diffs) |
| 28 | mouse | 16706 | Ksr1 | kinase suppressor of ras 1 | XM_006532334.4 | 68.3% | 42.5% | (many diffs) |
| 29 | mouse | 16706 | Ksr1 | kinase suppressor of ras 1 | NM_013571.3 | 66.9% | 40.9% | (many diffs) |
| 30 | mouse | 16706 | Ksr1 | kinase suppressor of ras 1 | XM_011248770.3 | 66.5% | 41.3% | (many diffs) |
| 31 | mouse | 16706 | Ksr1 | kinase suppressor of ras 1 | XM_011248771.3 | 65% | 39.8% | (many diffs) |
| 32 | mouse | 16706 | Ksr1 | kinase suppressor of ras 1 | XR_388355.4 | 57.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 1628
- ORF length:
- 1530
- Sequence:
-
1 AGCGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG AATGAGGCCA AGGTGAAGGA 121 GACGCTGCGG CGCTGTGGGG CCAGCGGGGA TGAGTGTGGC CGTCTGCAGT ATGCCCTCAC 181 CTGCCTGCGG AAGGTGACAG GCCTGGGAGG GGAGCACAAG GAGGACTCCA GTTGGAGTTC 241 ATTGGATGCG CGGCGGGAAA GTGGCTCAGG GCCTTCCACG GACACCCTCT CAGCAGCCAG 301 CCTGCCCTGG CCCCCAGGGA GCTCCCAGCT GGGCAGAGCA GGCAACAGCG TCCAGGGCCC 361 ACGCTCCATC TCCGTGTCAG CTCTGCCCGC CTCAGACTCC CCCACCCCCA GCTTCAGTGA 421 GGGCCTCTCA GACACCTGTA TTCCCCTGCA CGCCAGCGGC CGGCTGACCC CCCGTGCCCT 481 GCACAGCTTC ATCACCCCGC CCACCACACC CCAGCTGCGA CGGCACACCA AGCTGAAGCC 541 ACCACGGACG CCCCCCCCAC CCAGCCGCAA GGTCTTCCAG CTGCTGCCCA GCTTCCCCAC 601 ACTCACCCGG AGCAAGTCCC ATGAGTCTCA GCTGGGGAAC CGCATTGATG ACGTCTCCTC 661 GATGAGGTTT GATCTCTCGC ATGGATCCCC ACAGATGGTA CGGAGGGATA TCGGGCTGTC 721 GGTGACGCAC AGGTTCTCCA CCAAGTCCTG GCTGTCGCAG TCTGCCACGT GTGCCAGAGA 781 GCATGATATT TGGAGTGAAG TGCAAGCATT GCAGTTGAAG TGTCACAACA AATGTACAAA 841 GAGCCCCTGC TGTAGATATC TCTGCACTAA CTCGGCTTCG AGGACAGAAT CTGTCCCCTC 901 GGACATCACc aacccggtgg acagagcagc cgaaccccat tttggaaccc tccccaaagc 961 actgacaaag aaggagcacc ctccggccat gaatcacctg gactccagca gcaacccttc 1021 ctccaccacc tcctccacac cctcctcacc ggcgcccttc ccgacatcat ccaacccatc 1081 cagcgccacc acgcccccca acccctcacc tggccagcgg gacagcaggt tcaacttccc 1141 agctgcctac ttcattcatc atagacagca gtttatcttt ccagtgccat ctgctggcca 1201 ttgctggaaa tgcctcctta ttgcagaaag tttaaaggaa aacgctttca acatttcagc 1261 ctttgcacac gcagccccgc tccctgaagc tgccgacggt acccggctcg atgaccagcc 1321 gaaagcagat gtgttggaag ctcacgaagc ggaggctgag gagccagagg ctggcaagtc 1381 agaggcagaa gacgatgagg acgaggtgga cgacttgccg agctctcgcc ggccctggcg 1441 gggccccatc tctcgcaagg ccagccagac cagcgtgtac ctgcaggagt gggacatccc 1501 cttcgagcag gtagagctgg gcgagcccat cgggcagggc cgctgGGGCC GGGTGCACCG 1561 CGGCCGCTGG CATGGCGAGT GGCCCATCGC CTGCTTGAAG ATGGACGGCC CACAACCCAG 1621 ACCCACCTGA AGCTCTCANN GAAAGAGGTG ATGAACTACC GGCAGACGCG GCATGAGAAC 1681 GTGGTGCTCT TCATGGGGGC CTGCATGAAC CCGCCCCACC CTGGCCATTA TCACCAGCTT 1741 CTGCAAGGGG CGGACGTTGC ACTCGTTTGT GAGGGACCCC AAGACGTCTC TGGACATCAA 1801 CAAGACGAGG CAAATCGCTC AGGAGATCAT CAAGGGCATG GGATATCTTC ATGCCAAGGG 1861 CATCGTACAC AAAGATCTCA AATCTAAGAA CGTCTTCTAT GACAACGGCA AGGTGGTCAT 1921 CACAGACTTC GGGCTGTTTG GGATCTCAGG CGTGGTCCGA GAGGGACGGC GTGAGAACCA 1981 GCTAAAGCTG TCCCACGACT GGCTGTGCTA TCTGGCCCCT GAGATTGTAC GCGAGATGAC 2041 CCCCGGGAAG GACGAGGATC AGCTGCCATT CTCCAAAGCT GCTGATGTCT ATGCATTTGG 2101 GACTGTTTGG TATGAGCTGC AAGCAAGAGA CTGGCCCTTG AAGAACCAGG CTGCAGAGGC 2161 ATCCATCTGG CAGATTGGAA GCGGGGAAGG AATGAAGCGT GTCCTGACTT CTGTCAGCTT 2221 GGGGAAGGAA GTCAGTGAGA TCCTGTCGGC CTGCTGGGCT TTCGACCTGC AGGAGAGACC 2281 CAGCTTCAGC CTGCTGATGG ACATGCTGGA GAAACTTCCC AAGCTGAACC GGCGGCTCTC 2341 CCACCCTGGA CACTTCTGGA AGTCAGCTGA GTTGTTGCCA ACTTTCTTGT ACAAAGTTGG 2401 CATTATAAGA AAGCATTGCT TATCAATTTG TTGCAACGAA CAGGTCACTA TCAGTCAAAA 2461 TAAAATCATT ATTGCCATCC CAGCTGAATC CCCC