Construct: ORF ccsbBroadEn_14986
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014333.1_s300c1, BRDN0000395018
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GUSBP15 (11042)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 102725009 | LOC102725009 | putative inactive beta-gluc... | XM_017030249.2 | 85.6% | 83.4% | (many diffs) |
| 2 | human | 375513 | GUSBP4 | GUSB pseudogene 4 | NR_133000.1 | 71.9% | (many diffs) | |
| 3 | human | 100049076 | GUSBP9 | GUSB pseudogene 9 | NR_033968.1 | 68.5% | (many diffs) | |
| 4 | human | 106660613 | LINC00680-GUSBP4 | LINC00680-GUSBP4 readthrough | NR_132998.1 | 57.3% | (many diffs) | |
| 5 | human | 728411 | GUSBP1 | GUSB pseudogene 1 | NR_027028.2 | 55.8% | (many diffs) | |
| 6 | human | 106660613 | LINC00680-GUSBP4 | LINC00680-GUSBP4 readthrough | NR_003660.2 | 50.5% | (many diffs) | |
| 7 | human | 106660613 | LINC00680-GUSBP4 | LINC00680-GUSBP4 readthrough | NR_132997.1 | 37.5% | (many diffs) | |
| 8 | human | 387036 | GUSBP2 | GUSB pseudogene 2 | NR_003504.3 | 34.7% | (many diffs) | |
| 9 | human | 11039 | GUSBP14 | GUSB pseudogene 14 | NR_024054.2 | 34.6% | (many diffs) | |
| 10 | human | 2990 | GUSB | glucuronidase beta | XM_017012093.2 | 31.3% | 16.3% | (many diffs) |
| 11 | human | 2990 | GUSB | glucuronidase beta | XM_017012092.1 | 29.2% | 14.2% | (many diffs) |
| 12 | human | 2990 | GUSB | glucuronidase beta | XM_017012091.1 | 27.6% | 14.3% | (many diffs) |
| 13 | human | 2990 | GUSB | glucuronidase beta | XM_011516114.2 | 27.6% | 13.6% | (many diffs) |
| 14 | human | 2990 | GUSB | glucuronidase beta | NM_001293105.2 | 27.6% | 13.7% | (many diffs) |
| 15 | human | 653188 | GUSBP3 | GUSB pseudogene 3 | NR_027386.2 | 26.9% | (many diffs) | |
| 16 | human | 2990 | GUSB | glucuronidase beta | NM_001293104.2 | 26% | 12% | (many diffs) |
| 17 | human | 2990 | GUSB | glucuronidase beta | XM_011516113.1 | 24.7% | 12.1% | (many diffs) |
| 18 | human | 11042 | GUSBP15 | GUSB pseudogene 15 | NR_034021.1 | 23.7% | (many diffs) | |
| 19 | human | 11039 | GUSBP14 | GUSB pseudogene 14 | NR_029426.1 | 21.5% | (many diffs) | |
| 20 | human | 2990 | GUSB | glucuronidase beta | XM_005250297.4 | 20% | 10% | (many diffs) |
| 21 | human | 2990 | GUSB | glucuronidase beta | NM_000181.4 | 18.4% | 8.7% | (many diffs) |
| 22 | human | 2990 | GUSB | glucuronidase beta | XR_001744660.2 | 17.9% | (many diffs) | |
| 23 | human | 653080 | GUSBP16 | GUSB pseudogene 16 | NR_146391.1 | 17.4% | (many diffs) | |
| 24 | human | 2990 | GUSB | glucuronidase beta | XR_927461.3 | 16.6% | (many diffs) | |
| 25 | human | 114899 | C1QTNF3 | C1q and TNF related 3 | NR_146599.1 | 9% | (many diffs) | |
| 26 | human | 11039 | GUSBP14 | GUSB pseudogene 14 | XR_002958912.1 | 7.8% | (many diffs) | |
| 27 | human | 375513 | GUSBP4 | GUSB pseudogene 4 | NR_132999.1 | 7.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 489
- ORF length:
- 420
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGATAGGAGC AACCCTGTAA AACCAGCCTT AGACTATTTT TCAAACAGGC 121 TGGTGAATTA CCAGATCTCC GTCAAGTGCA GTAACCAGTT CAAGTTGGAA GTGTGTCTTT 181 TGAATGCAGA AAACAAAGTC GTGGACAACC AGGCTGGGAC CCAGGGCCAG CTGAAGGTGC 241 TGGGTGCCAA CCTCTGGTGG CCGTACCTGA TGCACGAACA CCCCGCCTAC CTgtactcct 301 gggaGGATGG TGATTGCTCA CACCAAAGCC TTGGACCCCT CCCAGCCTGT GACCTTTGGG 361 ACCAACTCCA CCTACGCAGC AGACAAGGGG GCTCTGTATG TGGATGTGAT CCGTGTGAAC 421 AGCTACTACT CTTGGTATCG CAACTACGGG CACCTGGAGT TGATTCAGCT GCAGCTGGCC 481 GCCCAGTTTT GCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 541 tttgttgcaa cgaac