Construct: ORF ccsbBroadEn_15016
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018826.1_s300c1, BRDN0000458122
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- DAPK2 (23604)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23604 | DAPK2 | death associated protein ki... | NM_014326.5 | 99.4% | 33.5% | (many diffs) |
| 2 | human | 23604 | DAPK2 | death associated protein ki... | XM_017022044.1 | 93.3% | 35.4% | (many diffs) |
| 3 | human | 23604 | DAPK2 | death associated protein ki... | XM_011521414.1 | 90.8% | 32.6% | (many diffs) |
| 4 | human | 23604 | DAPK2 | death associated protein ki... | XM_011521413.2 | 90.7% | 31.8% | (many diffs) |
| 5 | human | 23604 | DAPK2 | death associated protein ki... | XM_011521417.1 | 84.9% | 39.2% | (many diffs) |
| 6 | human | 23604 | DAPK2 | death associated protein ki... | XM_017022045.1 | 84.9% | 39.2% | (many diffs) |
| 7 | human | 23604 | DAPK2 | death associated protein ki... | XM_017022046.1 | 84.9% | 39.2% | (many diffs) |
| 8 | human | 23604 | DAPK2 | death associated protein ki... | XM_011521415.3 | 80.3% | 34.5% | (many diffs) |
| 9 | human | 23604 | DAPK2 | death associated protein ki... | NM_001363730.2 | 70.9% | 25.4% | (many diffs) |
| 10 | human | 23604 | DAPK2 | death associated protein ki... | XM_017022043.1 | 55.5% | 21.4% | (many diffs) |
| 11 | human | 23604 | DAPK2 | death associated protein ki... | XM_011521421.3 | 51.8% | 10.7% | (many diffs) |
| 12 | human | 23604 | DAPK2 | death associated protein ki... | XM_017022047.1 | 39.6% | 6.2% | (many diffs) |
| 13 | human | 23604 | DAPK2 | death associated protein ki... | XM_017022048.2 | 39.6% | 6.2% | (many diffs) |
| 14 | human | 23604 | DAPK2 | death associated protein ki... | XM_017022049.1 | 39.6% | 6.2% | (many diffs) |
| 15 | human | 23604 | DAPK2 | death associated protein ki... | XM_017022050.1 | 39.6% | 6.2% | (many diffs) |
| 16 | human | 23604 | DAPK2 | death associated protein ki... | XM_017022051.1 | 39.6% | 6.2% | (many diffs) |
| 17 | mouse | 13143 | Dapk2 | death-associated protein ki... | NM_010019.3 | 91.3% | 32.1% | (many diffs) |
| 18 | mouse | 13143 | Dapk2 | death-associated protein ki... | XM_006510811.2 | 52.6% | 9.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 488
- ORF length:
- 390
- Sequence:
-
1 GATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG TTCCAGGCCT CAATGAGGAG 121 TCCAAACATG GAGCCATTCA AGCAGCAGAA GGTGGAGGAC TTTTATGACA TCGGAGAGGA 181 GCTGGGGAGT GGCCAGTTTG CCATCGTGAA GAAGTGCCGG GAGAAGAGCA CGGGGCTTGA 241 GTATGCAGCC AAGTTCATCA AGAAGCGGCA GAGCCGGGCG AGCCGGCGCG GTGTGAGCCG 301 GGAGGAGATC GAGCGGGAGG TGAGCATCCT GCGGCAGGTG CTGCACCACA ATGTCATCAC 361 GCTGCACGAC GTCTATGAGA ACCGCACCGA CGTGGTGCTC ATCCTTGAGC TAGTGTCTGG 421 AGGAGAGCTC TTCGATTTCC TGGCCCAGAA GGAGTCACTG AGTGANGANG ANGCCACCCA 481 GCTTCATTAA GCAGATCCTG GATGGGGTGA ACTACCTTCA CACAAAGAAA ATTGCTCACT 541 TTGATCTCAA GCCAGAAAAC ATTATGTTGT TAGACAAGAA TATTCCCATT CCACACATCA 601 AGCTGATTGA CTTTGGTCTG GCTCACGAAA TAGAAGATGG AGTTGAATTT AAGAATATTT 661 TTGGGGACGC CGGAATTTGT TGCTCCAGAA ATTGTGAACT ACGAGCCCCT GGGGTCTGGA 721 GGCTGACATG TGGAGCATAG GCGTCATCAC CTACATCCTC TTAAGTGGAG CATCCCCTTT 781 CCTGGGAGAC ACGAAGCAGG AAACACTGGC AAATATCACA GCAGTGAGTT ACGACTTTGA 841 TGAGGAATTC TTCAGCCAGA CGAGCGAGCT GGCCAAGGAC TTTATTCGGA AGCTTCTGGT 901 TAAAGAGACC CGGAAACGGC TCACAATCCA AGAGGCTCTC AGACACCCCT GGATCACGCC 961 GGTGGACAAC CAGCAAGCCA TGGTGCGCAG GGAGTCTGTG GTCAATCTGG AGAACTTCAG 1021 GAAGCAGTAT GTCCGCAGGC GGTGGAAGCT TTCCTTCAGC ATCGTGTCCC TGTGCAACCA 1081 CCTCACCCGC TCGCTGATGA AGAAGGTGCA CCTGAGGCCG GATGAGGACC TGAGGAACTG 1141 TGAGAGTGAC ACTGAGGAGG ACATCGCCAG GAGGAAAGCC CTCCACCCAC GGAGGAGGAG 1201 CAGCACCTCC TTGCCAACTT TCTTGTACAA AGTTGGCATT ATAAGAAAGC ATTGCTTATC 1261 AATTTGTTGC AACGAACAGG TCACTATCAG TCAAAATAAA ATCATTATTG CCATCCAGCT 1321 GAAGC