Construct: ORF ccsbBroadEn_15020
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018843.1_s300c1, BRDN0000458139
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PLXNB2 (23654)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23654 | PLXNB2 | plexin B2 | NM_012401.4 | 25.4% | 23.8% | (many diffs) |
| 2 | human | 23654 | PLXNB2 | plexin B2 | XM_005261909.1 | 25.4% | 23.8% | (many diffs) |
| 3 | human | 23654 | PLXNB2 | plexin B2 | XM_005261910.3 | 25.4% | 23.8% | (many diffs) |
| 4 | human | 23654 | PLXNB2 | plexin B2 | XM_005261911.4 | 25.4% | 23.8% | (many diffs) |
| 5 | human | 23654 | PLXNB2 | plexin B2 | XM_006724413.2 | 25.4% | 23.8% | (many diffs) |
| 6 | human | 23654 | PLXNB2 | plexin B2 | XM_017028703.1 | 25.4% | 23.8% | (many diffs) |
| 7 | human | 23654 | PLXNB2 | plexin B2 | XM_017028704.2 | 25.4% | 23.8% | (many diffs) |
| 8 | human | 23654 | PLXNB2 | plexin B2 | XM_011530682.2 | 24.6% | 23% | (many diffs) |
| 9 | mouse | 140570 | Plxnb2 | plexin B2 | NM_001159521.2 | 22.7% | 23.3% | (many diffs) |
| 10 | mouse | 140570 | Plxnb2 | plexin B2 | NM_001284506.1 | 22.7% | 23.3% | (many diffs) |
| 11 | mouse | 140570 | Plxnb2 | plexin B2 | NM_138749.3 | 22.7% | 23.3% | (many diffs) |
| 12 | mouse | 140570 | Plxnb2 | plexin B2 | XM_006520412.1 | 22.7% | 23.3% | (many diffs) |
| 13 | mouse | 140570 | Plxnb2 | plexin B2 | XM_006520413.1 | 22.7% | 23.3% | (many diffs) |
| 14 | mouse | 140570 | Plxnb2 | plexin B2 | XM_011245449.1 | 22.7% | 23.3% | (many diffs) |
| 15 | mouse | 140570 | Plxnb2 | plexin B2 | XM_011245450.2 | 22.7% | 23.3% | (many diffs) |
| 16 | mouse | 140570 | Plxnb2 | plexin B2 | XM_011245451.2 | 22.7% | 23.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 82
- ORF end:
- 1492
- ORF length:
- 1410
- Sequence:
-
1 CTGATAGTGA CCTGTTCGTT GCAACAAATT GATGAGCAAT GCTTTTTTAT AATGCCAACT 61 TTGTACAAAA AAGTTGGCAC CATGCACACG CTCTTCCTGG AGCTCCTGGA GCAGTACGTG 121 GTGGCCAAGA ACCCCAAGCT GATGCTGCGC AGGTCTGAGA CTGTGGTGGA GAGGATGCTG 181 TCCAACTGGA TGTCCATCTG CCTGTACCAG TACCTCAAGG ACAGTGCCGG GGAGCCCCTG 241 TACAAGCTCT TCAAGGCCAT CAAACATCAG GTGGAAAAGG GCCCGGTGGA TGCGGTACAG 301 AAGAAGGCCA AGTACACTCT CAACGACACG GGGCTGCTGG GGGATGATGT GGAGTACGCA 361 CCCCTGACGG TGAGCGTGAT CGTGCAGGAC GAGGGAGTGG ACGCCATCCC GGTGAAGGTC 421 CTCAACTGTG ACACCATCTC CCAGGTCAAG GAGAAGATCA TTGACCAGGT GTACCGTGGG 481 CAGCCCTGCT CCTGCTGGCC CAGGCCAGAC AGCGTGGTCC TGGAGTGGCG TCCGGGCTCC 541 ACAGCGCAGA TCCTGTCGGA CCTGGACCTG ACGTCACAGC GGGAGGGCCG GTGGAAGCGC 601 GTCAACACCC TTATGCACTA CAATGTCCGG GATGGAGCCA CCCTCATCCT GTCCAAGGTG 661 GGGGTCTCCC AGCAGCCGGA GGACAGCCAG CAGGACCTGC CTGGGGAGCG CCATGCCCTC 721 CTGGAGNAGN AGAACCCGGG TGTGGCACCT GGTGCGGCCG ACCGACGAGG TGGACGAGGG 781 CAAGTCCAAG AGAGGCAGCG TGAAAGAGAA GGAGCGGACG AAGGCCATCA CCGAGATCTA 841 CTGACGCGGC TGCTCTCAGT CAAGGGCACA CTGCAGCAGT TTGTGGACAA CTTCTTCCAG 901 AGCGTGCTGG CGCCTGGGCA CGCGGTGCCA CCTGCAGTCA AGTACTTCTT CGACTTCCTG 961 GACGAGCAGG CAGAGAAGCA CAACATCCAG GATGAAGACA CCATCCACAT CTGGAAGACG 1021 AACAGTTTAC CGCTCCGGTT CTGGGTGAAC ATCCTCAAGA ACCCCCACTT CATCTTTGAC 1081 GTGCATGTCC ACGAGGTGGT GGACGCCTCG CTGTCAGTCA TCGCGCAGAC CTTCATGGAT 1141 GCCTGCACGC GCACGGAGCA TAAGCTGAGC CGCGATTCTC CCAGCAACAA GCTGCTGTAC 1201 GCCAAGGAGA TCTCCACCTA CAAGAAGATG GTGGAGGATT ACTACAAGGG GATCCGGCAG 1261 ATGGTGCAGG TCAGCGACCA GGACATGAAC ACACACCTGG CAGAGATTTC CCGGGCGCAC 1321 ACGGACTCCT TGAACACCCT CGTGGCACTC CACCAGCTCT ACCAATACAC GCAGAAGTAC 1381 TATGACGAGA TCATCAATGC CTTGGAGGAG GATCCTGCCG CCCAGAAGAT GCAGCTGGCC 1441 TTCCGCCTGC AGCAGATTGC CGCTGCACTG GAGAACAAGG TCACTGACCT CTTGCCAACT 1501 TTCTTGTACA AAGTTGGCAT TATAAGAAAG CATTGCTTAT CAATTTGTTG CAACGAACAG 1561 GTCACTATCA GTCAAAATAA AATCATTATT TGCCATCCAG CTGATTC