Construct: ORF ccsbBroadEn_15020

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018843.1_s300c1, BRDN0000458139
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PLXNB2 (23654)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23654 PLXNB2 plexin B2 NM_012401.4 25.4% 23.8% (many diffs)
2 human 23654 PLXNB2 plexin B2 XM_005261909.1 25.4% 23.8% (many diffs)
3 human 23654 PLXNB2 plexin B2 XM_005261910.3 25.4% 23.8% (many diffs)
4 human 23654 PLXNB2 plexin B2 XM_005261911.4 25.4% 23.8% (many diffs)
5 human 23654 PLXNB2 plexin B2 XM_006724413.2 25.4% 23.8% (many diffs)
6 human 23654 PLXNB2 plexin B2 XM_017028703.1 25.4% 23.8% (many diffs)
7 human 23654 PLXNB2 plexin B2 XM_017028704.2 25.4% 23.8% (many diffs)
8 human 23654 PLXNB2 plexin B2 XM_011530682.2 24.6% 23% (many diffs)
9 mouse 140570 Plxnb2 plexin B2 NM_001159521.2 22.7% 23.3% (many diffs)
10 mouse 140570 Plxnb2 plexin B2 NM_001284506.1 22.7% 23.3% (many diffs)
11 mouse 140570 Plxnb2 plexin B2 NM_138749.3 22.7% 23.3% (many diffs)
12 mouse 140570 Plxnb2 plexin B2 XM_006520412.1 22.7% 23.3% (many diffs)
13 mouse 140570 Plxnb2 plexin B2 XM_006520413.1 22.7% 23.3% (many diffs)
14 mouse 140570 Plxnb2 plexin B2 XM_011245449.1 22.7% 23.3% (many diffs)
15 mouse 140570 Plxnb2 plexin B2 XM_011245450.2 22.7% 23.3% (many diffs)
16 mouse 140570 Plxnb2 plexin B2 XM_011245451.2 22.7% 23.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
82
ORF end:
1492
ORF length:
1410
Sequence:
1CTGATAGTGA CCTGTTCGTT GCAACAAATT GATGAGCAAT GCTTTTTTAT AATGCCAACT
61TTGTACAAAA AAGTTGGCAC CATGCACACG CTCTTCCTGG AGCTCCTGGA GCAGTACGTG
121GTGGCCAAGA ACCCCAAGCT GATGCTGCGC AGGTCTGAGA CTGTGGTGGA GAGGATGCTG
181TCCAACTGGA TGTCCATCTG CCTGTACCAG TACCTCAAGG ACAGTGCCGG GGAGCCCCTG
241TACAAGCTCT TCAAGGCCAT CAAACATCAG GTGGAAAAGG GCCCGGTGGA TGCGGTACAG
301AAGAAGGCCA AGTACACTCT CAACGACACG GGGCTGCTGG GGGATGATGT GGAGTACGCA
361CCCCTGACGG TGAGCGTGAT CGTGCAGGAC GAGGGAGTGG ACGCCATCCC GGTGAAGGTC
421CTCAACTGTG ACACCATCTC CCAGGTCAAG GAGAAGATCA TTGACCAGGT GTACCGTGGG
481CAGCCCTGCT CCTGCTGGCC CAGGCCAGAC AGCGTGGTCC TGGAGTGGCG TCCGGGCTCC
541ACAGCGCAGA TCCTGTCGGA CCTGGACCTG ACGTCACAGC GGGAGGGCCG GTGGAAGCGC
601GTCAACACCC TTATGCACTA CAATGTCCGG GATGGAGCCA CCCTCATCCT GTCCAAGGTG
661GGGGTCTCCC AGCAGCCGGA GGACAGCCAG CAGGACCTGC CTGGGGAGCG CCATGCCCTC
721CTGGAGNAGN AGAACCCGGG TGTGGCACCT GGTGCGGCCG ACCGACGAGG TGGACGAGGG
781CAAGTCCAAG AGAGGCAGCG TGAAAGAGAA GGAGCGGACG AAGGCCATCA CCGAGATCTA
841CTGACGCGGC TGCTCTCAGT CAAGGGCACA CTGCAGCAGT TTGTGGACAA CTTCTTCCAG
901AGCGTGCTGG CGCCTGGGCA CGCGGTGCCA CCTGCAGTCA AGTACTTCTT CGACTTCCTG
961GACGAGCAGG CAGAGAAGCA CAACATCCAG GATGAAGACA CCATCCACAT CTGGAAGACG
1021AACAGTTTAC CGCTCCGGTT CTGGGTGAAC ATCCTCAAGA ACCCCCACTT CATCTTTGAC
1081GTGCATGTCC ACGAGGTGGT GGACGCCTCG CTGTCAGTCA TCGCGCAGAC CTTCATGGAT
1141GCCTGCACGC GCACGGAGCA TAAGCTGAGC CGCGATTCTC CCAGCAACAA GCTGCTGTAC
1201GCCAAGGAGA TCTCCACCTA CAAGAAGATG GTGGAGGATT ACTACAAGGG GATCCGGCAG
1261ATGGTGCAGG TCAGCGACCA GGACATGAAC ACACACCTGG CAGAGATTTC CCGGGCGCAC
1321ACGGACTCCT TGAACACCCT CGTGGCACTC CACCAGCTCT ACCAATACAC GCAGAAGTAC
1381TATGACGAGA TCATCAATGC CTTGGAGGAG GATCCTGCCG CCCAGAAGAT GCAGCTGGCC
1441TTCCGCCTGC AGCAGATTGC CGCTGCACTG GAGAACAAGG TCACTGACCT CTTGCCAACT
1501TTCTTGTACA AAGTTGGCAT TATAAGAAAG CATTGCTTAT CAATTTGTTG CAACGAACAG
1561GTCACTATCA GTCAAAATAA AATCATTATT TGCCATCCAG CTGATTC

Download FASTA (ORF) (Full)

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