Construct: ORF ccsbBroadEn_15041
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018897.1_s300c1, BRDN0000458193
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- STK36 (27148)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27148 | STK36 | serine/threonine kinase 36 | NM_001369423.1 | 99.4% | 19.4% | (many diffs) |
| 2 | human | 27148 | STK36 | serine/threonine kinase 36 | NM_015690.5 | 99.4% | 19.4% | (many diffs) |
| 3 | human | 27148 | STK36 | serine/threonine kinase 36 | XM_011510959.2 | 98.7% | 19.6% | (many diffs) |
| 4 | human | 27148 | STK36 | serine/threonine kinase 36 | NM_001243313.2 | 97.8% | 19.7% | (many diffs) |
| 5 | human | 27148 | STK36 | serine/threonine kinase 36 | XM_017003804.2 | 97.8% | 19.7% | (many diffs) |
| 6 | human | 27148 | STK36 | serine/threonine kinase 36 | XM_011510960.1 | 95.3% | 15.3% | (many diffs) |
| 7 | human | 27148 | STK36 | serine/threonine kinase 36 | XR_922904.2 | 62.7% | (many diffs) | |
| 8 | human | 27148 | STK36 | serine/threonine kinase 36 | XM_011510961.1 | 59.3% | 7.9% | (many diffs) |
| 9 | human | 27148 | STK36 | serine/threonine kinase 36 | XM_017003805.2 | 59.3% | 7.9% | (many diffs) |
| 10 | human | 27148 | STK36 | serine/threonine kinase 36 | XR_001738704.2 | 57.8% | (many diffs) | |
| 11 | mouse | 269209 | Stk36 | serine/threonine kinase 36 | XM_006496039.1 | 85.3% | 19% | (many diffs) |
| 12 | mouse | 269209 | Stk36 | serine/threonine kinase 36 | NM_175031.3 | 85.3% | 19% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 97
- ORF end:
- 943
- ORF length:
- 846
- Sequence:
-
1 AATGATTTAT TTTGACTGAT AGTGACCTGT TCGTTGCAAC AAATTGATGA GCAATGCTTT 61 TTTATAATGC CAACTTTGTA CAAAAAAGTT GGCACCATGG AAAAGTACCA CGTGTTGGAG 121 ATGATTGGAG AAGGCTCTTT TGGGAGGGTG TACAAGGGTC GAAGAAAATA CAGTGCTCAG 181 GTCGTGGCCC TGAAGTTCAT CCCAAAATTG GGGCGCTCAG AGAAGGAGCT GAGGAATTTG 241 CAACGAGAGA TTGAAATAAT GCGGGGTCTG CGGCATCCCA ACATTGTGCA TATGCTTGAC 301 AGCTTTGAAA CTGATAAAGA GGTGGTGGTG GTGACAGACT ATGCTGAGGG AGAGCTCTTT 361 CAGATCCTAG AAGATGACGG AAAACTTCCT GAAGACCAGG TTCAGGCCAT TGCTGCCCAG 421 TTGGTGTCAG CCCTGTACTA TCTGCATTCC CACCGCATCC TACACCGAGA TATGAAGCCT 481 CAGAACATCC TCCTCGCCAA GGGTGGTGGC ATCAAGCTCT GTGACTTTGG ATTTGCCCGG 541 GCTATGAGCA CCAATACAAT GGTGCTGACA TCCATCAAAG GCACACCACT CTATATGTCT 601 CCAGAGCTGG TGGAGGAGCG ACCATACGAC CACACAGCGG ACCTCTGGTC TGTTGGCTGC 661 ATACTATATG AACTGGCAGT AGGCACCCCT CCCTTCTATG CTACAAGCAT CTTTCAGCTG 721 GTCAGCCTCA TTCTCAAGGA CCCTGTGCGC TGGCCCTCAA CCATCAGTCC CTGCTTTAAG 781 AACTTCCTGC AGGACTGCTC ACCAAGACCC ACGGCAGCGA CTGTCCTGGC CAGACCTCTT 841 ATATCACCCT TTATTGCTGG TCATGTCACC ATAATAACTG AGCCAGCAGG CCCAGAATTT 901 GGGGACCCCA TTCACCAGCG CTAcccccag aacttcaggt cctaaaggac gaacaggccc 961 atcggttggc ccccaagggt aatcagtctc gcatcttgac tcaggcctat aaacgcatgg 1021 ctgaggaggc catgcagaag aaacatcaga acacaggacc tgcccttgag caagaggaca 1081 agaccagcaa ggtggctcct ggcacagccc ctctgcccag actcggggcc actcctcagg 1141 aatcaagcct cctggccggg atcttagcct cagaattgaa gagcagctgg gctaaatcag 1201 ggactggaga ggtgccctct gcacctcggg aaaaccggac caccccagat tgtgaacgag 1261 cattcccaga ggagaggcca gaggtgctgg gccagcggag cactgatgta gtggacctgg 1321 aaaatgagga gccagacagt gacaatgagt ggcagcacct gctagagacc actgagcctg 1381 tgcctattca actgaaggct cctctcacct tgctgtgtaa tcctgacttc tgccagcgca 1441 tccagagtca gctgcatgaa gctggagggc agatcctgaa tggcatcttg gagggtgctt 1501 cccacatcct gcctgcattc cgggtcctga gcagtcttct ctccagctgc agtgattctg 1561 ttgccttgta ttccttctgc cgggaggcag ggcttcctgg gctgctgctg agtctactca 1621 ggcacagtca ggagagcaac agcctccagc agcaatcttg gtatgggacc ttcttacagg 1681 acctgatggc tgtgattcag gcctactttg cctgtacctt caatctggag aggagccaga 1741 caagtgacag cctgcaggtg tttcaggagg ctgccaacct ttttctggac ctgttgggga 1801 aactgctggc ccaaccagat gactctgagc agactttgcg gagggacagc cttatgtgct 1861 ttactgtcct gtgcgaagcc atggatggga acagccgggc catctccaaa gccttttact 1921 ccagcttgct gacgacacag caggttgtct tggatgggct ccttcatggc ttgacagttc 1981 cacagctccc tgtccacact ccccaaggag ccccgcaagt gagccagcca ctgcgagagc 2041 agagtgagga tatacctgga gccatttcct ctgccctggc agccatatgc actgctcctg 2101 tgggactgcc cgactgctgg gatgccaagg agcaggtctg ttggcatttg gcaaatcagc 2161 taactgaaga cagcagccag ctcaggccat ccctcatctc tggcctgcag catcccatcc 2221 tgtgcctgca ccttctcaag gttctatact cctgctgcct tgtcagtgag ggcctgtgcc 2281 gtcttctggg gcaggagccc ctggccttgg aatccctgtt tatgttgatt cagggcaagg 2341 taaaagtagt agattgggaa gagtctactg aagtgacact ctacttcctc acccttcttg 2401 tctttcggct ccaaaacctg ccttgtggaa tggagaagct aggcagtgac gttgctactc 2461 tctttaccca ttcgcatgtc gtctctcttg tgagtgcagc agcctgtcta ttgggacagc 2521 ttggtcagca aggggtgacc tttgacctcc agcccatgga atggatggct gcagccacac 2581 atgccttgtc tgcccctgca gaggttcggt tgactccacc aggtagttgt ggattctatg 2641 atggcctcct tatccttctg ttgcagctcc tcactgagca ggggaaggct agcctaatca 2701 gggatatgtc cagttcagaa atgtggaccg ttttgtggca ccgcttctcc atggtcctga 2761 ggctccccga ggaggcatct gcacaggaag gggagctttc gctatccagt ccaccaagcc 2821 ctgagccaga ctggacactg atttctcccc agggcatggc agccctgctg agcctggcca 2881 tggccacctt tacccaggag ccccagttat gcctgagctg cctgtcccag catggaagta 2941 tcctcatgtc catcctgaag catctgcttt gccccagctt cctgaatcaa ctgcgccagg 3001 cgcctcatgg gtctgagttt ctccctgtcg tggtgctctc tgtctgccag ctcctttgct 3061 tcccctttgc gctggacatg gatgctgacc tccttatagg tgtcttggcc gacctcaggg 3121 actcagaagt tgcagcccat ctgctgcagg tctgctgcta ccatcttccg ttgatgcaag 3181 tggagctgcc catcagcctt ctcacacgcc tggccctcat ggatcccacC TCTTTTAAAC 3241 CAGTTGGTGA ACACAGTTTT GCCTTCCCCT AGAACCCATC GTCTCGTTTC TCTCAGTGCC 3301 CTCCTGAGTG ACCAGCCACT GTTGACTTCC GACTTTCTCT CTCTGCTGCC CCATACTGCC 3361 AGGGTCCTGT CTCCCAGCCA CTTGTCCTTT ATCCAAGAGC TTCTGGCTGG CTCTGATGAA 3421 TCCTATCGGC CCCTGCGCAG CCTCCTGGGC CACCCAGAGA ATTCTGTGCG GGCACACACT 3481 TATAGGCTCC TGGGACACTT GCTCCAACAC AGCATGGCCC TGCGTGGGGC ACTGCAGAGC 3541 CAGTCTGGAC TGCTCAGCCT TCTGCTGCTT GGGCTTGGAG ACAAGGATCC TGTTGTGCGG 3601 TGCAGTGCCA GCTTTGCTGT GGGCAATGCA GCCTACCAGG CTGGTCCTCT GGGACCTGCC 3661 CTGGCAGCTG CAGTGCCCAG TATGACCCAG CTGCTTGGAG ATCCTCAGGC TGGTATCCGG 3721 CGCAATGTTG CATCAGCTCT GGGCAACTTG GGACCTGAAG GTTTGGGAGA GGAGCTGTTA 3781 CAGTGCGAAG TACCCCAGCG GCTCCTAGAA ATGGCATGTG GAGACCCCCA GCCAAATGTG 3841 AAGGAGGCTG CCCTCATTGC CCTCCGGAGC CTGCAACAGG AGCCTGGCAT CCATCAGGTA 3901 CTGGTGTCCC TGGGTGCCAG TGAGAAACTA TCCTTGCTCT CTCTGGGGAA TCAGTCACTG 3961 CCACACAGCA GTCCTAGGCC TGCCTCTGCC AAACACTGCA GGAAACTCAT TCACCTCCTG 4021 AGGCCAGCCC ATAGCATGTT GCCAACTTTC TTGTACAAAG TTGGCATTAT AAGAAAGCAT 4081 TGCTTATCAA TTTGTTGCAA CGAACAGGTC ACTATCAGTC AAAATAAAAT CATTATTGCC 4141 ATCCAAGCTG ATATCCCCCT