Transcript: Mouse NM_175031.3

Mus musculus serine/threonine kinase 36 (Stk36), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Stk36 (269209)
Length:
5329
CDS:
249..4199

Additional Resources:

NCBI RefSeq record:
NM_175031.3
NBCI Gene record:
Stk36 (269209)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_175031.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000362357 GATTGGGCAAGGAGCTATTAA pLKO_005 3919 CDS 100% 15.000 21.000 N Stk36 n/a
2 TRCN0000362358 TCTACGCCTGCTGCTATATTA pLKO_005 2401 CDS 100% 15.000 21.000 N Stk36 n/a
3 TRCN0000362288 TCAAAGGCACACCGCTCTATA pLKO_005 727 CDS 100% 13.200 9.240 N Stk36 n/a
4 TRCN0000028805 GCATCCCAACATTGTGCATAT pLKO.1 425 CDS 100% 10.800 7.560 N Stk36 n/a
5 TRCN0000028821 CCTGTTGTGTAACCCTGACTT pLKO.1 1565 CDS 100% 4.950 3.465 N Stk36 n/a
6 TRCN0000028784 GCAAGGTGAAAGTAGCAGATT pLKO.1 2491 CDS 100% 4.950 3.465 N Stk36 n/a
7 TRCN0000028810 GCCGTATAGTTGTGGCTTCTA pLKO.1 2774 CDS 100% 4.950 3.465 N Stk36 n/a
8 TRCN0000028792 GCCTGTAAACTCATGGCTGAA pLKO.1 1161 CDS 100% 4.050 2.835 N Stk36 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_175031.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15041 pDONR223 41.8% 85.3% 19% None (many diffs) n/a
2 ccsbBroad304_15041 pLX_304 0% 85.3% 19% V5 (not translated due to prior stop codon) (many diffs) n/a
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