Construct: ORF ccsbBroadEn_15049
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018917.1_s300c1, BRDN0000458213
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- HIPK2 (28996)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 28996 | HIPK2 | homeodomain interacting pro... | NM_001113239.3 | 66.4% | 23.5% | (many diffs) |
| 2 | human | 28996 | HIPK2 | homeodomain interacting pro... | XM_006715935.2 | 65.3% | 23.1% | (many diffs) |
| 3 | human | 28996 | HIPK2 | homeodomain interacting pro... | XM_017012069.1 | 65.3% | 23.1% | (many diffs) |
| 4 | human | 28996 | HIPK2 | homeodomain interacting pro... | NM_022740.5 | 64.9% | 22.9% | (many diffs) |
| 5 | human | 28996 | HIPK2 | homeodomain interacting pro... | XM_011516081.2 | 64.5% | 22.8% | (many diffs) |
| 6 | human | 28996 | HIPK2 | homeodomain interacting pro... | XM_011516079.3 | 57.6% | 20.4% | (many diffs) |
| 7 | human | 28996 | HIPK2 | homeodomain interacting pro... | XM_011516080.3 | 57.5% | 20.6% | (many diffs) |
| 8 | human | 28996 | HIPK2 | homeodomain interacting pro... | XM_011516077.3 | 56.5% | 20% | (many diffs) |
| 9 | human | 28996 | HIPK2 | homeodomain interacting pro... | XM_011516078.3 | 56.4% | 20.2% | (many diffs) |
| 10 | mouse | 15258 | Hipk2 | homeodomain interacting pro... | NM_001136065.2 | 60.1% | 23.3% | (many diffs) |
| 11 | mouse | 15258 | Hipk2 | homeodomain interacting pro... | NM_001294143.1 | 59.8% | 23.2% | (many diffs) |
| 12 | mouse | 15258 | Hipk2 | homeodomain interacting pro... | NM_001294144.1 | 59.7% | 23.1% | (many diffs) |
| 13 | mouse | 15258 | Hipk2 | homeodomain interacting pro... | XM_006505603.3 | 58.8% | 22.9% | (many diffs) |
| 14 | mouse | 15258 | Hipk2 | homeodomain interacting pro... | NM_010433.2 | 58.5% | 22.7% | (many diffs) |
| 15 | mouse | 15258 | Hipk2 | homeodomain interacting pro... | XM_006505602.3 | 58.4% | 22.6% | (many diffs) |
| 16 | mouse | 15258 | Hipk2 | homeodomain interacting pro... | XR_001785097.1 | 14.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 99
- ORF end:
- 1155
- ORF length:
- 1056
- Sequence:
-
1 CTCGGATTTT ATTTTGACTG ATAGTGACCT GTTCGTTGCA ACAAATTGAT GAGCAATGCT 61 TTTTTATAAT GCCAACTTTG TACAAAAAAG TTGGCACCAT GTGGTCCCTG GGCTGTGTTA 121 TTGCAGAATT GTTCCTGGGT TGGCCGTTAT ATCCAGGAGC TTCGGAGTAT GATCAGATTC 181 GGTATATTTC ACAAACACAG GGTTTGCCTG CTGAATATTT ATTAAGCGCC GGGACAAAGA 241 CAACTAGGTT TTTCAACCGT GACACGGACT CACCATATCC TTTGTGGAGA CTGAAGACAC 301 CAGATGACCA TGAAGCAGAG ACAGGGATTA AGTCAAAAGA AGCAAGAAAG TACATTTTCA 361 ACTGTTTAGA TGATATGGCC CAGGTGAACA TGACGACAGA TTTGGAAGGG AGCGACATGT 421 TGGTAGAAAA GGCTGACCGG CGGGAGTTCA TTGACCTGTT GAAGAAGATG CTGACCATTG 481 ATGCTGACAA GAGAATCACT CCAATCGAAA CCCTGAACCA TCCCTTTGTC ACCATGACAC 541 ACTTACTCGA TTTTCCCCAC AGCACACACG TCAAATCATG TTTCCAGAAC ATGGAGATCT 601 GCAAGCGTCG GGTGAATATG TATGACACGG TGAACCAGAG CAAAACCCCT TTCATCACGC 661 ACGTGGCCCC CAGCACGTCC ACCAACCTGA CCATGACCTT TAACAACCAG CTGACCACTG 721 TCCACAACCA GCCCTCAGCG GCATCCATGG CTGCAGTGGC CCAGCGGAGC ATGCCCCTGC 781 AGACAGGAAC AGCCCAGATT TGTGCCCGGC CTGACCCGTT CCAGCAAGCT CTCATCGTGT 841 GTCCCCCCGG CTTCCAAAGG CTTGCAGGCC TCCTCCCTTC TAAGCACGCT GGGCTACTTC 901 GTgcgaatgg aaaatgcagt tcccatcgtc actcaagccc caggagctca gcctcttcag 961 atccaaccag gtctgcttgc ccagcaggct tggccaagtg ggacccagca gatcctgctt 1021 cccccagcat ggcagcaact gactggagtg gccacccaca catcagtgca gcatgccacc 1081 gtgattcccg agaccatggc aggcacccag cagctggcgg actggagaaa tacgcatgct 1141 cacggaagcc attataatcc catcatgcag cagcctgcac tattgaccgg tcatgtgacc 1201 cttccagcag cacagccctt aaatgtgggt gtggcccacg tgatgcggca gcagccaacc 1261 agcaccacct cctcccggaa gagtaagcag caccagtcat ctgtgagaaa tgtctccacc 1321 tgtgaggtgt cctcctctca ggccatcagc tccccacagc gatccaagcg tgtcaaggag 1381 aacacacctc cccgctgtgc catggtgcac agtagcccgg cctgcagcac ctcggtcacc 1441 tgtgggtggg gcgacgtggc ctccagcacc acccgggaac ggcagcggca gacaattgtc 1501 attcccgaca ctcccagccc cacggtcagc gtcatcacca tcagcagtga cacggacgag 1561 gaggaggaac agaaacacgc ccccaccagc actgtctcca agcaaagaaa aaacgtcatc 1621 agctgtgtca cagtccacga ctccccctac tccgactcct ccagcaacac cAGCCCCCTT 1681 AATCCGTGCC CGGCGGGGGG GGGTGGGCCC CAAAAAAAAC CAATCCCTTT GACACCAAAG 1741 GGGACCCAGG AGAATCCCAG CACGGGGAAA CCCCCGAACC TTCTATGTGC CACCCCTGAA 1801 AACCCAGGCC AGCGAAGTAT TGGTGGAGAG TGATAGCCTG GTGCCAGTCA ACACCAGTCA 1861 CCACTCGTCC TCCTACAAGT CCAAGTCCTC CAGCAACGTG ACCTCCACCA GCGGTCACTC 1921 TTCAGGGAGC TCATCTGGAG CCATCACCTA CCGGCAGCAG CGGCCGGGCC CCCACTTCCA 1981 GCAGCAGCAG CCACTCAATC TCAGCCAGGC TCAGCAGCAC ATCACCACGG ACCGCACTGG 2041 GAGCCACCGA AGGCAGCAGG CCTACATCAC TCCCACCATG GCCCAGGCTC CGTACTCCTT 2101 CCCGCACAAC AGCCCCAGCC ACGGCACTGT GCACCCGCAT CTGGCTGCAG CCGCTGCCGC 2161 TGCCCACCTC CCCACCCAGC CCCACCTCTA CACCTACACT GCGCCGGCGG CCCTGGGCTC 2221 CACCGGCACC GTGGCCCACC TGGTGGCCTC GCAAGGCTCT GCGCGCCACA CCGTGCAGCA 2281 CACTGCCTAC CCAGCCAGCA TCGTCCACCA GGTCCCCGTG AGCATGGGCC CCCGGGTCCT 2341 GCCCTCGCCC ACCATCCACC CGAGTCAGTA TCCAGCCCAA TTTGCCCACC AGACCTACAT 2401 CAGCGCCTCG CCAGCCTCCA CCGTCTACAC TGGATACCCA CTGAGCCCCG CCAAGGTCAA 2461 CCAGTACCCT TACATATTGC CAACTTTCTT GTACAAAGTT GGCATTATAA GAAAGCATTG 2521 CTTATCAATT TGTTGCAACG AACAGGTCAC TATCAGTCAA AATAAAATCA TTATTGCCAT 2581 CCAGCCTGAA TCCCCCCT