Construct: ORF ccsbBroadEn_15152
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018928.1_s300c1, BRDN0000458224
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- PEAK1 (79834)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | NM_024776.4 | 90.7% | 6.2% | (many diffs) |
| 2 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_005254670.2 | 90.7% | 6.2% | (many diffs) |
| 3 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_005254671.2 | 90.7% | 6.2% | (many diffs) |
| 4 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_005254673.2 | 90.7% | 6.2% | (many diffs) |
| 5 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_005254674.2 | 90.7% | 6.2% | (many diffs) |
| 6 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_005254675.4 | 90.7% | 6.2% | (many diffs) |
| 7 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_011522033.2 | 90.7% | 6.2% | (many diffs) |
| 8 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_011522034.2 | 90.7% | 6.2% | (many diffs) |
| 9 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_011522035.2 | 90.7% | 6.2% | (many diffs) |
| 10 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_011522036.2 | 90.7% | 6.2% | (many diffs) |
| 11 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_011522037.2 | 90.7% | 6.2% | (many diffs) |
| 12 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_011522038.2 | 90.7% | 6.2% | (many diffs) |
| 13 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_011522039.2 | 90.7% | 6.2% | (many diffs) |
| 14 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_024450056.1 | 90.7% | 6.2% | (many diffs) |
| 15 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_024450057.1 | 90.7% | 6.2% | (many diffs) |
| 16 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_024450058.1 | 90.7% | 6.2% | (many diffs) |
| 17 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_024450059.1 | 90.7% | 6.2% | (many diffs) |
| 18 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_024450060.1 | 90.7% | 6.2% | (many diffs) |
| 19 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_024450061.1 | 90.7% | 6.2% | (many diffs) |
| 20 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_024450062.1 | 90.7% | 6.2% | (many diffs) |
| 21 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_024450063.1 | 90.7% | 6.2% | (many diffs) |
| 22 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_024450064.1 | 90.7% | 6.2% | (many diffs) |
| 23 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_011522040.1 | 69.3% | 7.9% | (many diffs) |
| 24 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_011522041.1 | 51.6% | 10.3% | (many diffs) |
| 25 | human | 79834 | PEAK1 | pseudopodium enriched atypi... | XM_011522042.2 | 41.5% | 3.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 159
- ORF end:
- 570
- ORF length:
- 411
- Sequence:
-
1 NNANGNNNNT NNNNNGNNNN ANNGNGANNN AACGACGTCC AGTTTTTAGT TCGGGCCCCA 61 AATAAGATTC TATTTGGACT GAAAGTTACT NTTNNTTGCA ANAAATTGAT GAGCAATGCT 121 TTTTTATAAT GCCAANTTNN TACAAAAAAN TNGGCACCAT GTCTGCTTGT AACACCTTTA 181 CTGAACATGT TTGGAAACCT GGTGAATGCA AGAATTGCTT TAAACCTAAA AGTTTGCACC 241 AGCTTCCCCC AGACCCTGAG AAGGCACCCA TCACCCATGG CAATGTGAAA ACTAATGCCA 301 ATCACAGTAA CAACCACCGC ATCAGGAACA CGGGCAATTT CCGGCCTCCT GTGGCTAAAA 361 AACCCACTAT AGCTGTGAAG CCCACTATGA TAGTGGCAGA TGGGCAAAGT ATATGTGGTG 421 AGCTTAGCAT CCAAGAACAC TGTGAGAACA AACCTGTCAT CATAGGGTGG AACCGAAAAG 481 CGGATCCTCA TTTCAGACGC CAAAGGCATC CTCCAGTGTC TGCTCTGGGG CCCCCGCGAA 541 GATCTCTTCC AGACTTTCAC CGCCTGCCCT AGCCTAGTAC AGAGGAACAC CCTGCTCCAA 601 AACTGGCTAG ACATCAAGCG AACACTGCTC ATGATCAAGT TTGCTGAGAA GTCCCTGGAC 661 AGGGAAGGTG GAATCAGCCT TGAGGACTGG CTTTGTGCTC AGTATTTGGC TTTTGCCACT 721 ACAGACTCCC TCAGTTGTAT TGTGAAAATT CTGCAGCACC GTTTGCCAAC TTTCTTGTAC 781 AAAGTTGGCA TTATAAGAAA GCNNNNNTTN NCNANNTGTT GCAACGAACA GGTCACTATC 841 AGTCAAAATA AAATCATTAT TGCCATCNNG NNNGATTCAA AGTTGGCATT ATAAGAAAGC 901 ANCCCCCTGC TTATCAATTT GTTGCAACGA ACAGGTCACT ATCAGTCAAA ATAAAATCAT 961 TATTTGCCAT CCAGGCTGAT ATCCCCGTAT AGTGAGTCGT ATTACATGGA TCATAGCTGT 1021 TTCCTGGCAG CTCTGGGCCC GTGTCTCAAT Ccacatcacc agattcttct ttaacagaag 1081 aatcacgttc tgagacagcc agtagtttat cccagaagat ttgtaatggg ggattatctc 1141 ctggtaaccc aggagattct aaggacatga aggaaattga gcccaattat gaaagtccct 1201 ctagtaataa tcaggataaa gattcatcac aggcttccaa aagctcaata aaagttccag 1261 agacccacaa agcagtcctt gctctccgat tagaagagaa agatggcaag attgctgtac 1321 aaactgagaa ggaagaaagt aaagcctcta cagatgttgc tgggcaagca gtaaccataa 1381 accttgtccc cacagaagag caagcaaaac cttaccgagt tgtgaacctg gaacagccat 1441 tgtgcaagcc atatactgtc gtggatgtgt cagcagccat ggccagtgag cacctcgagg 1501 gccctgttaa cagccccaag acaaaaagct catcctctac tccaaactct ccagttacat 1561 catcttcatt gacaccagga caaataagtg cccatttcca aaaatccagt gcaattcgat 1621 accaagaagt atggacttct agcaccagtc cacgacaaaa gatacctaaa gtagaactaa 1681 ttactagtgg aactggacca aatgttcctc caaggaaaaa ctgtcacaaa tcagcaccta 1741 catcacccac agctacaaac atttcctcca aaaccatccc tgttaagtca cctaatttgt 1801 ctgaaattaa atttaatagt tataacaatg ctggtatgcc accttttcca attatcattc 1861 atgacgagcc aacttatgct cggagttcca aaaatgctat caaagttccc attgttatca 1921 atccaaatgc atatgacaat ctagctatct acaaaagttt tctgggaaca agtggagaac 1981 tctcagtgaa ggaaaaaacc acaagtgtaa taagccatac ttatgaagaa atagaaacag 2041 aaagcaaagt gcctgataac accactagca aaaccactga ctgtcttcaa actaaagggt 2101 tttcaaacag cacagagcat aaaaggggct cagtggctca gaaggttcaa gagtttaaca 2161 actgtctcaa cagaggtcag tcttcaccac agagaagcta tagttccagc cacagctccc 2221 cagcaaagat ccagagagcc actcaagagc ctgtggccaa aatagaaggc actcaggagt 2281 ctcagatggt gggcagcagc agcaccagag agaaagcaag cacagtgctt tctcagattg 2341 tggcttcaat ccaaccccca cagtctcctc cagaaacacc tcaatctggc cctaaagctt 2401 gcagtgtgga agagctttat gccattcctc cagatgctga tgttgctaag agcacaccta 2461 agagtacgcc agtccggccc aaatctctct ttacatctca gcctagtggt gaggctgaag 2521 cacctcagac cacagacagt cctaccacca aagtacagaa agacccatcc ataaagccag 2581 tcaccccctc tccctccaaa ttagtgacta gcccccaaag tgagccacca gctccctttc 2641 ccccgccacg ctctacttct tctccttacc atgcaggtaa ccttttgcag aggcatttca 2701 ccaactggac caagccaacc agccctacca ggtcaacaga agctgaatca gttttgcact 2761 ctgaaggcag caggcgggca gctgatgcaa aacctaagcg ctggatatca tttaaaagct 2821 tcttccgccg tcggaaaaca gatgaggagg atgacaaaga gaaagagcga gagaaaggga 2881 aactggtggg cctggatggc acagtcattc acatgctgcc tcctcctcca gttcagcgcc 2941 atcactggtt cacagaggcg aaaggagagt ccagtgagaa accagccatt gtcttcatgt 3001 acaggtgcga ccctgctcaa ggccagctca gtgtggatca gagcaaggct aggacagacc 3061 aggcagcagt catggagaag ggtagagcag agaatgcatt actacaggac tcagagaaga 3121 agaggagtca ttcttctcca tcacagattc ctaaaaagat tctcagtcac atgacccatg 3181 aagtaacaga ggatttttct cctcgggatc caagaactgt tgttgggaag caagatggca 3241 ggggctgcac ttcagtcaca acagcattgt ccctacctga actggaaagg gaagatggaa 3301 aagaagacat ttcagatcct atggacccga acccttgtag tgcaacatac agcaacttag 3361 ggcaatctag agcagccatg atacctccca agcagccacg acagcccaag ggagctgtgg 3421 acgatgccat cgcctttgga gggaaaacag accaagaagc acccaatgct tcccaaccta 3481 caccaccccc actgccaaag aagatgatca taagagccaa tacagagcca atctccaagg 3541 acctccaaaa atccatggaa agtagtcttt gtgtcatggc taatcccacc tatgatatcg 3601 accccaactg ggatgccagc agtgctggtt cttccatcag ctatgaactc aaaggactgg 3661 acattgagtc ttatgactcc ttggaaaggc ctttgcgcaa ggagagacct gtcccctcag 3721 cagcaaacag catttccagc ttaaccactc tcagtattaa ggatagattt tccaacagca 3781 tggaatccct ctccagccgg cgtgggccct cttgcagaca gggccgaggc atccagaagc 3841 cgcagagaca agcactttat cgaggacttg agaatcggga ggaagtagtg ggtaaaatcc 3901 gaagccttca tacagatgcc ttgaagaaac tggctgttaa atgcgaagac cttttcatgg 3961 ctgggcagaa agaccagctc cgttttggag tggacagctg gtcagacttc aggctaacca 4021 gtgacaaacc atgttgtgag gcaggtgatg cggtttacta tactgcttca tatgcaaaag 4081 atccacttaa taactatgca gtcaagatct gtaagagcaa agctaaagaa tctcagcagt 4141 attatcacag cttggctgtc cggcagagtc tggctgtcca ttttaacatt cagcaggact 4201 gtggtcattt ccttgctgaa gtccctaacc gtctgcttcc ctgggaggat ccagatgacc 4261 ctgaaaagga tgaggatgac atggaagaga ctgaagaaga cgccaaagga gaaacggatg 4321 ggaaaaaccc aaagccctgt tctgaagcag catcatccca gaaagagaat cagggagtca 4381 tgagcaagaa gcagaggagc cacgttgtgg tcatcaccag ggaggttcca tgtcttactg 4441 tggctgattt tgtgcgagac tctctggccc agcatgggaa aagccctgat ttgtatgaga 4501 ggcaggtgtg tctgctgctc ttacagctat gctctggtct tgagcacctc aaaccctacc 4561 atgtcactca ctgcgatcta cgcctagaga acctgctact tgtccactac cagcctgggg 4621 ggactgccca aggctttggg cctgcagagc ccagccccac ctcatcttat cccactaggc 4681 ttatagtgag caacttctct caggccaagc agaagagcca tctggtggac cccgagatcc 4741 tccgggacca gtctcgcctt gccccagaga tcataacagc tacccagtat aaaaagtgtg 4801 atgagttcca gacaggcatc ctcatctatg agatgctgca cctacccaac ccctttgatg 4861 agaacccaga gctgaaggag agggaataca cacgagcaga cctgcctcgc atcccattcc 4921 gctcccccta ctcccggggt ctgcagcagc tggccagctg cctcctgaat cccaaccctt 4981 ctgagcggat cctcatttca gacgccaaag gcatcctcca gtgtctgctc tggggccccc 5041 gcgaagatct cttccagact ttcaccgcct gccctagcct agtacagagg aacaccctgc 5101 tccaaaactg gctagacatc aagcgaacac tgctcatgat caagtttgct gagaagtccc 5161 tggacaggga aggtggaatc agccttgagg actggctttg tgctcagtat ttggcttttg 5221 ccactacaga ctccctcagt tgtattgtga aaattctgca gcaccgtttg ccaactttct 5281 tgtacaaagt tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac