Construct: ORF ccsbBroadEn_15162

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005453.2_s300c1, BRDN0000458348
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAP3K19 (80122)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80122 MAP3K19 mitogen-activated protein k... NM_001282883.1 36.5% 36.5% 1_813del;1318_1380del
2 human 80122 MAP3K19 mitogen-activated protein k... NM_001018047.2 36.3% 36.3% 1_819del;1324_1386del
3 human 80122 MAP3K19 mitogen-activated protein k... NM_001018046.2 32.9% 32.9% 1_963del;1468_1530del
4 human 80122 MAP3K19 mitogen-activated protein k... XM_017005006.2 13.9% 13.9% 1_3051del;3556_3618del
5 human 80122 MAP3K19 mitogen-activated protein k... NM_001018044.2 13.8% 13.8% 1_3078del;3583_3645del
6 human 80122 MAP3K19 mitogen-activated protein k... XM_011511896.3 13.6% 13.6% 1_3132del;3637_3699del
7 human 80122 MAP3K19 mitogen-activated protein k... XM_011511897.3 13.6% 13.6% 1_3132del;3637_3699del
8 human 80122 MAP3K19 mitogen-activated protein k... XM_011511894.3 12.9% 12.9% 1_3333del;3838_3900del
9 human 80122 MAP3K19 mitogen-activated protein k... XM_017005004.2 12.9% 12.9% 1_3333del;3838_3900del
10 human 80122 MAP3K19 mitogen-activated protein k... XM_017005005.2 12.9% 12.9% 1_3333del;3838_3900del
11 human 80122 MAP3K19 mitogen-activated protein k... NM_025052.4 12.6% 12.6% 1_3417del;3922_3984del
12 human 80122 MAP3K19 mitogen-activated protein k... XM_011511892.1 12.6% 12.6% 1_3417del;3922_3984del
13 human 80122 MAP3K19 mitogen-activated protein k... XM_017005003.1 12.6% 12.6% 1_3417del;3922_3984del
14 human 80122 MAP3K19 mitogen-activated protein k... XM_011511891.2 12.4% 12.4% 1_3468del;3973_4035del
15 human 80122 MAP3K19 mitogen-activated protein k... XR_002959344.1 9.8% 1_3556del;4061_5101del
16 human 80122 MAP3K19 mitogen-activated protein k... XR_002959343.1 9.5% 1_3740del;4245_5285del
17 human 80122 MAP3K19 mitogen-activated protein k... XR_001738962.1 8.9% 1_3708del;4087_4088ins125
18 mouse 22625 Map3k19 mitogen-activated protein k... NM_011737.1 11.2% 12.2% (many diffs)
19 mouse 22625 Map3k19 mitogen-activated protein k... XM_006529396.3 9.7% 10.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
570
ORF length:
504
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgga gtttgttcct ggtggctcaa tctctagtat tataaaccgt tttgggccat
121tgcctgagat ggtgttctgt aaatatacga aacaaatact tcaaggtgtt gcttatctcc
181atgagaactg tgtggtacat cgcgatatca aaggaaataa tgttatgctc atgccaactg
241gaataataaa gctgattgac tttggctgtg ccaggcgttt ggcctgggca ggtttaaatg
301gcacccacag tgacatgctt aagtccatgc atgggactcc atattggatg gccccagaag
361tcatcaatga gtctggctat ggacggaaat cagatatctg gagcattggt tgtactgtgt
421ttgagatggc tacagggaag cctccactgg cttccatgga caggatggcc gccatgtttt
481acatcggagc acaccgaggg ctgatgcctc ctttaccaga ccacttctca gaaaatgcag
541cagactttgt gcgcatgtgc ctgaccaggt acccaacttt cttgtacaaa gttggcatta
601taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)